1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00051669-RA

PSME_00051669-RA


Description : (at2g40610 : 425.0) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A8 (EXPA8); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A2 (TAIR:AT5G05290.1); Has 2297 Blast hits to 2294 proteins in 186 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 45; Plants - 2187; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). & (q40636|expa2_orysa : 387.0) Expansin-A2 precursor (OsEXPA2) (Alpha-expansin-2) (OsEXP2) (OsaEXPa1.23) (RiExB) (RiExC) - Oryza sativa (Rice) & (reliability: 850.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051669-RA
Cluster HCCA clusters: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
179212 No alias expansin A15 0.02 Orthogroups_2024-Update
236978 No alias expansin A16 0.03 Orthogroups_2024-Update
A4A49_04302 No alias expansin-a10 0.03 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.02 Orthogroups_2024-Update
A4A49_26925 No alias expansin-a10 0.04 Orthogroups_2024-Update
A4A49_64370 No alias expansin-a1 0.03 Orthogroups_2024-Update
At3g15370 No alias Expansin 12 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSN2] 0.03 Orthogroups_2024-Update
At5g39260 No alias Expansin-A21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL81] 0.02 Orthogroups_2024-Update
Bradi2g22290 No alias expansin A1 0.02 Orthogroups_2024-Update
Bradi3g09950 No alias expansin 11 0.03 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.02 Orthogroups_2024-Update
Brara.D00393.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
GRMZM2G339122 No alias expansin A1 0.02 Orthogroups_2024-Update
GRMZM2G374248 No alias expansin 11 0.02 Orthogroups_2024-Update
LOC_Os01g14650 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g06000 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g39990 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_4979g0010 No alias (q40636|expa2_orysa : 406.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
MA_61945g0010 No alias (q40636|expa2_orysa : 398.0) Expansin-A2 precursor... 0.02 Orthogroups_2024-Update
Mp2g18610.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00011353-RA No alias (at2g40610 : 387.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00011357-RA No alias (at2g40610 : 390.0) member of Alpha-Expansin Gene... 0.05 Orthogroups_2024-Update
PSME_00025836-RA No alias (at2g40610 : 399.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00030400-RA No alias (q9m4x7|expa6_orysa : 228.0) Expansin-A6 precursor... 0.04 Orthogroups_2024-Update
PSME_00035760-RA No alias (at2g40610 : 381.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00039952-RA No alias (at5g05290 : 224.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
PSME_00055878-RA No alias (at5g02260 : 159.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
Potri.005G244100 No alias expansin 11 0.03 Orthogroups_2024-Update
Potri.013G154700 No alias expansin A8 0.02 Orthogroups_2024-Update
Potri.017G140000 No alias expansin A13 0.02 Orthogroups_2024-Update
Pp1s11_29V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Pp1s246_53V6 No alias alpha-expansin 1 0.03 Orthogroups_2024-Update
Pp1s251_70V6 No alias alpha-expansin 15 0.02 Orthogroups_2024-Update
Pp1s266_66V6 No alias alpha expansin xpa5 0.03 Orthogroups_2024-Update
Pp1s75_138V6 No alias alpha-expansin 8 0.02 Orthogroups_2024-Update
Seita.5G044100.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Seita.9G032400.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G238801.1 No alias alpha-class expansin 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0009143 nucleoside triphosphate catabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 160 237
IPR009009 RlpA-like_DPBB 64 149
No external refs found!