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  5. PSME_00051746-RA

PSME_00051746-RA


Description : (at3g03580 : 720.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 54534 Blast hits to 14239 proteins in 270 species: Archae - 2; Bacteria - 13; Metazoa - 57; Fungi - 143; Plants - 53473; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink). & (q76c99|rf1_orysa : 153.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1440.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051746-RA

Target Alias Description ECC score Gene Family Method Actions
124576 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At1g33350 No alias Pentatricopeptide repeat-containing protein At1g33350... 0.04 Orthogroups_2024-Update
At3g11460 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update
Brara.A02809.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.C01258.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C03290.1 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Brara.D01648.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E03491.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F03378.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H01226.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.H01279.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.03G227900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
MA_470679g0010 No alias (at3g24000 : 433.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Sobic.003G336400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G433600.1 No alias RNA editing factor *(OTP72) 0.03 Orthogroups_2024-Update
Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.03 Orthogroups_2024-Update
Sobic.009G241200.3 No alias RNA editing factor *(ECB2/VAC1) 0.02 Orthogroups_2024-Update
Solyc02g080350 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen01g052200 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen09g027460 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen10g030830 No alias PPR repeat 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 612 648
IPR002885 Pentatricopeptide_repeat 107 154
IPR002885 Pentatricopeptide_repeat 207 254
IPR002885 Pentatricopeptide_repeat 410 458
IPR002885 Pentatricopeptide_repeat 511 558
IPR002885 Pentatricopeptide_repeat 308 356
IPR032867 DYW_dom 785 909
IPR002885 Pentatricopeptide_repeat 182 204
IPR002885 Pentatricopeptide_repeat 650 676
IPR002885 Pentatricopeptide_repeat 687 710
No external refs found!