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  5. PSME_00051778-RA

PSME_00051778-RA


Description : (at1g32240 : 127.0) Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN1 and KAN4 appears to regulate the proper localization of PIN1 in early embryogenesis.; KANADI 2 (KAN2); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G17695.1); Has 1778 Blast hits to 1772 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 21; Plants - 1618; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description)


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051778-RA
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
A4A49_06988 No alias putative myb family transcription factor 0.03 Orthogroups_2024-Update
At2g02060 No alias Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q7X887] 0.03 Orthogroups_2024-Update
Bradi1g31837 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g29700 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.I01162.1 No alias GARP subgroup PHL transcription factor & transcription... 0.03 Orthogroups_2024-Update
Brara.I02613.1 No alias KANADI-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.12G089100 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G068930.39 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
LOC_Os08g33750 No alias myb-like DNA-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.008G081800 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.013G060200 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Pp1s32_66V6 No alias dna binding 0.02 Orthogroups_2024-Update
Sobic.007G132000.1 No alias KANADI-type transcription factor 0.02 Orthogroups_2024-Update
Solyc10g083340 No alias Myb family transcription factor APL (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!