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  5. PSME_00051804-RA

PSME_00051804-RA


Description : (at5g14820 : 171.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 37965 Blast hits to 11999 proteins in 283 species: Archae - 3; Bacteria - 24; Metazoa - 443; Fungi - 549; Plants - 35727; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description)


Gene families : OG_42_0008989 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008989_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051804-RA
Cluster HCCA clusters: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G019571 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os07g40820 No alias PPR repeat domain containing protein, putative, expressed 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 139 167
IPR002885 Pentatricopeptide_repeat 181 202
IPR002885 Pentatricopeptide_repeat 231 258
No external refs found!