1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00051817-RA

PSME_00051817-RA


Description : (at1g20190 : 379.0) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). & (q7xwu8|expa1_orysa : 375.0) Expansin-A1 precursor (OsEXPA1) (Alpha-expansin-1) (OsEXP1) (OsaEXPa1.16) (RiExA) - Oryza sativa (Rice) & (reliability: 758.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00051817-RA
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
143857 No alias expansin A4 0.02 Orthogroups_2024-Update
410512 No alias expansin A1 0.04 Orthogroups_2024-Update
75237 No alias expansin A7 0.03 Orthogroups_2024-Update
A4A49_04302 No alias expansin-a10 0.04 Orthogroups_2024-Update
A4A49_26925 No alias expansin-a10 0.02 Orthogroups_2024-Update
A4A49_38718 No alias expansin-a7 0.02 Orthogroups_2024-Update
A4A49_61517 No alias expansin-a23 0.05 Orthogroups_2024-Update
A4A49_64370 No alias expansin-a1 0.03 Orthogroups_2024-Update
At5g56320 No alias expansin A14 [Source:TAIR;Acc:AT5G56320] 0.04 Orthogroups_2024-Update
Bradi2g22290 No alias expansin A1 0.02 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.05 Orthogroups_2024-Update
Brara.D00393.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.E00745.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.H03119.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.I01201.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Glyma.04G021600 No alias expansin 11 0.04 Orthogroups_2024-Update
Glyma.05G025600 No alias expansin A1 0.02 Orthogroups_2024-Update
Glyma.06G021700 No alias expansin 11 0.04 Orthogroups_2024-Update
Glyma.06G195000 No alias expansin A15 0.04 Orthogroups_2024-Update
Glyma.11G160000 No alias expansin A8 0.03 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.03 Orthogroups_2024-Update
Glyma.20G033900 No alias expansin A15 0.03 Orthogroups_2024-Update
Kfl00857_0040 kfl00857_0040_v1.1 (at1g12560 : 155.0) Member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
MA_10232070g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_10377235g0010 No alias (at2g40610 : 412.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_134592g0010 No alias (q40636|expa2_orysa : 350.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
Mp3g03890.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp3g10160.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00011355-RA No alias (at2g40610 : 387.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00011357-RA No alias (at2g40610 : 390.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00018428-RA No alias (q40636|expa2_orysa : 402.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.07 Orthogroups_2024-Update
PSME_00025835-RA No alias (at1g26770 : 394.0) Encodes an expansin. Naming... 0.04 Orthogroups_2024-Update
PSME_00050683-RA No alias (q40636|expa2_orysa : 396.0) Expansin-A2 precursor... 0.04 Orthogroups_2024-Update
PSME_00051759-RA No alias (at2g40610 : 368.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Potri.016G098700 No alias Barwin-like endoglucanases superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G092700 No alias expansin A23 0.02 Orthogroups_2024-Update
Pp1s196_30V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Pp1s223_38V6 No alias alpha expansin xpa5 0.04 Orthogroups_2024-Update
Sobic.004G121900.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Sobic.004G238801.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 175 252
IPR009009 RlpA-like_DPBB 75 163
No external refs found!