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  5. PSME_00052029-RA

PSME_00052029-RA


Description : (at3g57670 : 341.0) NO TRANSMITTING TRACT (NTT); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 4 (TAIR:AT3G20880.1); Has 16303 Blast hits to 11155 proteins in 263 species: Archae - 2; Bacteria - 36; Metazoa - 14565; Fungi - 231; Plants - 853; Viruses - 60; Other Eukaryotes - 556 (source: NCBI BLink). & (gnl|cdd|68872 : 87.8) no description available & (reliability: 682.0) & (original description: no original description)


Gene families : OG_42_0000614 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052029-RA
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
A4A49_34445 No alias zinc finger protein wip2 0.03 Orthogroups_2024-Update
Brara.I05314.1 No alias C2H2 subclass WIP transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G084014 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
GRMZM2G436344 No alias C2H2-type zinc finger family protein 0.04 Orthogroups_2024-Update
Glyma.12G237800 No alias C2H2-type zinc finger family protein 0.04 Orthogroups_2024-Update
Glyma.13G203700 No alias C2H2-type zinc finger family protein 0.02 Orthogroups_2024-Update
LOC_Os05g37190 No alias ZOS5-08 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
Seita.2G162600.1 No alias C2H2 subclass WIP transcription factor 0.04 Orthogroups_2024-Update
Seita.3G224700.1 No alias C2H2 subclass WIP transcription factor 0.02 Orthogroups_2024-Update
Solyc01g087050 No alias Protein TRANSPARENT TESTA 1 (AHRD V3.3 *** A0A0B2QDT4_GLYSO) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!