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  5. PSME_00052040-RA

PSME_00052040-RA


Description : (at5g44550 : 92.4) Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G20390.1); Has 554 Blast hits to 554 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 554; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 184.8) & (original description: no original description)


Gene families : OG_42_0000213 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052040-RA
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
A4A49_12663 No alias casparian strip membrane protein 2 0.03 Orthogroups_2024-Update
A4A49_15920 No alias casparian strip membrane protein 1 0.02 Orthogroups_2024-Update
At2g36100 No alias Casparian strip membrane protein 1... 0.03 Orthogroups_2024-Update
Bradi1g29070 No alias Uncharacterised protein family (UPF0497) 0.02 Orthogroups_2024-Update
Bradi4g02050 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Brara.E02922.1 No alias lignin polymerization scaffold protein *(CASP) 0.03 Orthogroups_2024-Update
Brara.F03733.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H01038.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G002396 No alias Uncharacterised protein family (UPF0497) 0.02 Orthogroups_2024-Update
Glyma.07G251200 No alias Uncharacterised protein family (UPF0497) 0.02 Orthogroups_2024-Update
Glyma.17G023100 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
PSME_00008997-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
Potri.012G032300 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Pp1s118_36V6 No alias F9H3.17; integral membrane family protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Pp1s160_119V6 No alias No description available 0.04 Orthogroups_2024-Update
Pp1s20_129V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.3G084500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g097730 No alias CASP-like protein (AHRD V3.3 *** K4BJJ0_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006702 CASP_dom 38 193
No external refs found!