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  5. PSME_00052053-RA

PSME_00052053-RA


Description : (at1g11290 : 599.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 140.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1198.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052053-RA
Cluster HCCA clusters: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
124407 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
89230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g58370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A03053.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.B03211.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02827.1 No alias RNA editing factor *(MEF22) 0.03 Orthogroups_2024-Update
Brara.H02506.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J00664.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.07G068800 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
MA_10428121g0010 No alias (at4g37170 : 449.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_10436764g0010 No alias (at4g13650 : 603.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_12023g0010 No alias (at4g02750 : 731.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_175688g0010 No alias (at3g23330 : 531.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_4503g0010 No alias (at2g27610 : 599.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_68707g0010 No alias (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00006196-RA No alias (at1g11290 : 685.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Seita.5G385400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G339400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 131 178
IPR002885 Pentatricopeptide_repeat 333 381
IPR002885 Pentatricopeptide_repeat 434 482
IPR002885 Pentatricopeptide_repeat 399 430
IPR002885 Pentatricopeptide_repeat 577 603
IPR002885 Pentatricopeptide_repeat 206 232
IPR002885 Pentatricopeptide_repeat 105 129
IPR002885 Pentatricopeptide_repeat 508 532
IPR002885 Pentatricopeptide_repeat 234 262
IPR032867 DYW_dom 607 731
No external refs found!