Description : (q9smb4|psbs_tobac : 294.0) Photosystem II 22 kDa protein, chloroplast precursor (CP22) - Nicotiana tabacum (Common tobacco) & (at1g44575 : 287.0) Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin cycle but has a limited capacity of quenching singlet excited chlorophylls and is tolerant to lipid peroxidation.; NONPHOTOCHEMICAL QUENCHING 4 (NPQ4); FUNCTIONS IN: chlorophyll binding, xanthophyll binding; INVOLVED IN: response to karrikin, nonphotochemical quenching; LOCATED IN: chloroplast thylakoid membrane, chloroplast, PSII associated light-harvesting complex II, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 574.0) & (original description: no original description)
Gene families : OG_42_0005155 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005155_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00052084-RA | |
Cluster | HCCA clusters: Cluster_225 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Glyma.06G113200 | No alias | Chlorophyll A-B binding family protein | 0.03 | Orthogroups_2024-Update | |
Seita.5G395300.1 | No alias | non-photochemical quenching PsbS protein | 0.02 | Orthogroups_2024-Update | |
Solyc06g060340 | No alias | photosystem II subunit S | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEP | Predicted GO |
MF | GO:0003674 | molecular_function | IEP | Predicted GO |
MF | GO:0003677 | DNA binding | IEP | Predicted GO |
MF | GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | IEP | Predicted GO |
MF | GO:0004332 | fructose-bisphosphate aldolase activity | IEP | Predicted GO |
MF | GO:0004427 | inorganic diphosphatase activity | IEP | Predicted GO |
MF | GO:0005215 | transporter activity | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
BP | GO:0006694 | steroid biosynthetic process | IEP | Predicted GO |
MF | GO:0008047 | enzyme activator activity | IEP | Predicted GO |
BP | GO:0008202 | steroid metabolic process | IEP | Predicted GO |
MF | GO:0009678 | hydrogen-translocating pyrophosphatase activity | IEP | Predicted GO |
CC | GO:0016020 | membrane | IEP | Predicted GO |
MF | GO:0016229 | steroid dehydrogenase activity | IEP | Predicted GO |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Predicted GO |
MF | GO:0016636 | oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor | IEP | Predicted GO |
MF | GO:0016757 | transferase activity, transferring glycosyl groups | IEP | Predicted GO |
MF | GO:0016758 | transferase activity, transferring hexosyl groups | IEP | Predicted GO |
MF | GO:0016832 | aldehyde-lyase activity | IEP | Predicted GO |
MF | GO:0019208 | phosphatase regulator activity | IEP | Predicted GO |
MF | GO:0019211 | phosphatase activator activity | IEP | Predicted GO |
MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
MF | GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
CC | GO:0044427 | chromosomal part | IEP | Predicted GO |
CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
MF | GO:0051743 | red chlorophyll catabolite reductase activity | IEP | Predicted GO |
BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |
BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
BP | GO:1902600 | proton transmembrane transport | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR022796 | Chloroa_b-bind | 112 | 242 |
No external refs found! |