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  5. PSME_00052085-RA

PSME_00052085-RA


Description : (at1g69530 : 372.0) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1). & (q40636|expa2_orysa : 349.0) Expansin-A2 precursor (OsEXPA2) (Alpha-expansin-2) (OsEXP2) (OsaEXPa1.23) (RiExB) (RiExC) - Oryza sativa (Rice) & (reliability: 744.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052085-RA

Target Alias Description ECC score Gene Family Method Actions
236978 No alias expansin A16 0.02 Orthogroups_2024-Update
A4A49_04302 No alias expansin-a10 0.03 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.02 Orthogroups_2024-Update
A4A49_27627 No alias expansin-a4 0.02 Orthogroups_2024-Update
At1g20190 No alias Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3] 0.04 Orthogroups_2024-Update
At5g39310 No alias Expansin-A24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL76] 0.03 Orthogroups_2024-Update
Bradi2g22290 No alias expansin A1 0.02 Orthogroups_2024-Update
Bradi3g09950 No alias expansin 11 0.02 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.03 Orthogroups_2024-Update
Brara.C00061.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.E02601.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.F03107.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.I01201.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Glyma.07G229000 No alias expansin A15 0.03 Orthogroups_2024-Update
Glyma.12G150900 No alias expansin 12 0.03 Orthogroups_2024-Update
Glyma.15G037700 No alias expansin A4 0.03 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.03 Orthogroups_2024-Update
Glyma.19G024200 No alias expansin A15 0.03 Orthogroups_2024-Update
Kfl00164_0230 kfl00164_0230_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
LOC_Os01g14650 No alias expansin precursor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os02g51040 No alias expansin precursor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os03g60720 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g15840 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g30340 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_114349g0010 No alias (at1g26770 : 288.0) Encodes an expansin. Naming... 0.04 Orthogroups_2024-Update
MA_40314g0010 No alias (q40636|expa2_orysa : 396.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
MA_40671g0010 No alias (q40636|expa2_orysa : 346.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
MA_792493g0010 No alias (at1g69530 : 351.0) Member of Alpha-Expansin Gene... 0.05 Orthogroups_2024-Update
Mp2g18600.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp8g18860.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00009798-RA No alias (at1g69530 : 350.0) Member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00018428-RA No alias (q40636|expa2_orysa : 402.0) Expansin-A2 precursor... 0.05 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00050247-RA No alias (at2g40610 : 400.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00050683-RA No alias (q40636|expa2_orysa : 396.0) Expansin-A2 precursor... 0.05 Orthogroups_2024-Update
Potri.001G240900 No alias expansin A4 0.03 Orthogroups_2024-Update
Potri.005G244100 No alias expansin 11 0.03 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G098700 No alias Barwin-like endoglucanases superfamily protein 0.04 Orthogroups_2024-Update
Pp1s363_43V6 No alias alpha-expansin 1 0.02 Orthogroups_2024-Update
Seita.7G029300.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.001G033300.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.001G314600.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.004G121900.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G238801.1 No alias alpha-class expansin 0.01 Orthogroups_2024-Update
Sobic.010G006200.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Solyc06g049050 No alias expansin 2 0.03 Orthogroups_2024-Update
Solyc10g086520 No alias expansin 6 0.03 Orthogroups_2024-Update
Sopen02g032810 No alias Pollen allergen 0.02 Orthogroups_2024-Update
Sopen04g035500 No alias Pollen allergen 0.02 Orthogroups_2024-Update
Sopen06g032650 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 64 148
IPR007117 Expansin_CBD 160 237
No external refs found!