PSME_00052129-RA


Description : (at4g19380 : 592.0) Long-chain fatty alcohol dehydrogenase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT4G28570.1); Has 4189 Blast hits to 4124 proteins in 819 species: Archae - 35; Bacteria - 2697; Metazoa - 100; Fungi - 264; Plants - 164; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink). & (reliability: 1184.0) & (original description: no original description)


Gene families : OG_42_0001140 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001140_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052129-RA
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
At3g23410 No alias Long-chain-alcohol oxidase FAO3... 0.04 Orthogroups_2024-Update
At4g28570 No alias Long-chain-alcohol oxidase FAO4B... 0.03 Orthogroups_2024-Update
Glyma.09G218100 No alias Long-chain fatty alcohol dehydrogenase family protein 0.03 Orthogroups_2024-Update
LOC_Os10g33540 No alias alcohol oxidase, putative, expressed 0.04 Orthogroups_2024-Update
PSME_00040095-RA No alias (at4g19380 : 515.0) Long-chain fatty alcohol... 0.03 Orthogroups_2024-Update
Solyc09g090350 No alias Long-chain-alcohol oxidase (AHRD V3.3 *** K4CW61_SOLLC) 0.04 Orthogroups_2024-Update
Sopen08g001680 No alias GMC oxidoreductase 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEA InterProScan predictions
MF GO:0050660 flavin adenine dinucleotide binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR007867 GMC_OxRtase_C 451 580
IPR000172 GMC_OxRdtase_N 95 359
No external refs found!