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  5. PSME_00052183-RA

PSME_00052183-RA


Description : (at1g02150 : 315.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G02820.1); Has 10811 Blast hits to 5678 proteins in 200 species: Archae - 0; Bacteria - 11; Metazoa - 28; Fungi - 100; Plants - 10424; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description)


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052183-RA
Cluster HCCA clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
402234 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
At1g80270 No alias PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6] 0.02 Orthogroups_2024-Update
At4g01990 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.03 Orthogroups_2024-Update
Bradi2g10850 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
Bradi5g17360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A02474.1 No alias component *(mL101) of large mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Glyma.02G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
HORVU3Hr1G040710.1 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
LOC_Os01g19490 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g35730 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
PSME_00039610-RA No alias (at5g39710 : 272.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.02 Orthogroups_2024-Update
Potri.013G133000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G050300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G119000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.3G349700.1 No alias splicing factor *(RTP7) 0.03 Orthogroups_2024-Update
Sobic.010G252200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen02g023180 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 211 240
IPR002885 Pentatricopeptide_repeat 247 275
IPR002885 Pentatricopeptide_repeat 351 374
IPR002885 Pentatricopeptide_repeat 317 343
IPR002885 Pentatricopeptide_repeat 424 450
IPR002885 Pentatricopeptide_repeat 388 412
No external refs found!