Sopen06g016250

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g016250
Cluster	HCCA clusters: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
Kfl01263_0030	kfl01263_0030_v1.1	(original description: no original description)	0.02	Orthogroups_2024-Update
LOC_Os01g37610	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
LOC_Os02g15400	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Pp1s249_4V6	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc03g043680	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc06g011420	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc09g030500	No alias	No description available	0.02	Orthogroups_2024-Update
Sopen00g011290	No alias	gag-polypeptide of LTR copia-type	0.02	Orthogroups_2024-Update
Sopen01g009450	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update
Sopen01g011350	No alias	Domain of unknown function (DUF4219)	0.03	Orthogroups_2024-Update
Sopen01g016220	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.06	Orthogroups_2024-Update
Sopen02g014900	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen06g011320	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen07g008090	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen07g014860	No alias	gag-polypeptide of LTR copia-type	0.04	Orthogroups_2024-Update
Sopen11g014180	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	471	583
IPR001878	Znf_CCHC	224	240
IPR013103	RVT_2	821	1065
IPR025724	GAG-pre-integrase_dom	386	453

External Links

No external refs found!