1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00052361-RA

PSME_00052361-RA


Description : (at1g22990 : 144.0) Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G71050.1); Has 1142 Blast hits to 1079 proteins in 46 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 13; Plants - 1123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description)


Gene families : OG_42_0000041 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000041_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052361-RA
Cluster HCCA clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
A4A49_35643 No alias heavy metal-associated isoprenylated plant protein 21 0.03 Orthogroups_2024-Update
Bradi3g44820 No alias homolog of anti-oxidant 1 0.03 Orthogroups_2024-Update
Brara.A00324.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G104041 No alias Heavy metal transport/detoxification superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G264100 No alias Heavy metal transport/detoxification superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G011070.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G118340.7 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_111506g0010 No alias (at4g39700 : 170.0) Heavy metal transport/detoxification... 0.04 Orthogroups_2024-Update
MA_131067g0010 No alias (at2g28660 : 104.0) Chloroplast-targeted copper... 0.02 Orthogroups_2024-Update
Mp2g01800.1 No alias no hits & (original description: none) 0.03 Orthogroups_2024-Update
PSME_00018078-RA No alias (at4g39700 : 206.0) Heavy metal transport/detoxification... 0.02 Orthogroups_2024-Update
PSME_00018080-RA No alias (at4g39700 : 213.0) Heavy metal transport/detoxification... 0.02 Orthogroups_2024-Update
PSME_00026105-RA No alias (at1g71050 : 114.0) Heavy metal transport/detoxification... 0.05 Orthogroups_2024-Update
Potri.006G024800 No alias Heavy metal transport/detoxification superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G128400 No alias Heavy metal transport/detoxification superfamily protein 0.02 Orthogroups_2024-Update
Potri.015G144300 No alias Heavy metal transport/detoxification superfamily protein 0.03 Orthogroups_2024-Update
Pp1s66_115V6 No alias heavy metal-associated domain containing expressed 0.04 Orthogroups_2024-Update
Solyc01g105000 No alias Heavy metal transport/detoxification superfamily protein... 0.03 Orthogroups_2024-Update
Solyc03g025790 No alias Heavy metal transport/detoxification superfamily protein... 0.03 Orthogroups_2024-Update
Sopen11g003110 No alias Heavy-metal-associated domain 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0030001 metal ion transport IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006121 HMA_dom 30 83
No external refs found!