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  5. PSME_00052625-RA

PSME_00052625-RA


Description : (at1g20990 : 182.0) Cysteine/Histidine-rich C1 domain family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G16050.1); Has 1603 Blast hits to 716 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 20; Fungi - 0; Plants - 1573; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description)


Gene families : OG_42_0000716 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000716_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052625-RA
Cluster HCCA clusters: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g41890 No alias DC1 domain-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Seita.6G140500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G123300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc09g011260 No alias Cysteine/Histidine-rich C1 domain family protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR004146 DC1 338 386
IPR004146 DC1 42 86
IPR004146 DC1 284 329
IPR004146 DC1 95 143
IPR004146 DC1 396 445
No external refs found!