1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00052657-RA

PSME_00052657-RA


Description : (at3g57880 : 1197.0) Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT1G51570.1); Has 5845 Blast hits to 4237 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 3557; Fungi - 274; Plants - 1573; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink). & (reliability: 2394.0) & (original description: no original description)


Gene families : OG_42_0000144 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000144_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052657-RA
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
At1g22610 No alias C2 calcium/lipid-binding plant phosphoribosyltransferase... 0.06 Orthogroups_2024-Update
Brara.J02130.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.10G092200 No alias C2 calcium/lipid-binding plant phosphoribosyltransferase... 0.04 Orthogroups_2024-Update
Glyma.14G098500 No alias Calcium-dependent lipid-binding (CaLB domain) plant... 0.02 Orthogroups_2024-Update
Potri.016G049100 No alias Calcium-dependent lipid-binding (CaLB domain) plant... 0.03 Orthogroups_2024-Update
Pp1s280_45V6 No alias c2 domain-containing protein 0.02 Orthogroups_2024-Update
Solyc01g065500 No alias C2 calcium/lipid-binding plant phosphoribosyltransferase... 0.02 Orthogroups_2024-Update
Solyc01g086720 No alias C2 domain-containing family protein (AHRD V3.3 *** B9GFS0_POPTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR000008 C2_dom 687 801
IPR000008 C2_dom 522 628
IPR000008 C2_dom 361 463
IPR000008 C2_dom 77 175
IPR013583 PRibTrfase_C 946 1099
No external refs found!