1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00052693-RA

PSME_00052693-RA


Description : (at2g47500 : 509.0) P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1); Has 11938 Blast hits to 11443 proteins in 432 species: Archae - 0; Bacteria - 1; Metazoa - 5987; Fungi - 1397; Plants - 1883; Viruses - 0; Other Eukaryotes - 2670 (source: NCBI BLink). & (p46869|fla10_chlre : 216.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 1018.0) & (original description: no original description)


Gene families : OG_42_0000091 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000091_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052693-RA
Cluster HCCA clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G006341 No alias P-loop nucleoside triphosphate hydrolases superfamily... 0.03 Orthogroups_2024-Update
Glyma.03G233100 No alias kinesin 4 0.02 Orthogroups_2024-Update
Glyma.12G215200 No alias kinesin 3 0.01 Orthogroups_2024-Update
MA_161721g0010 No alias (at2g47500 : 622.0) P-loop nucleoside triphosphate... 0.03 Orthogroups_2024-Update
Mp4g01680.1 No alias motor protein (Kinesin-14) 0.01 Orthogroups_2024-Update
PSME_00002314-RA No alias (at2g47500 : 811.0) P-loop nucleoside triphosphate... 0.04 Orthogroups_2024-Update
PSME_00013726-RA No alias (at3g44730 : 236.0) kinesin-like protein 1 (KP1);... 0.01 Orthogroups_2024-Update
Seita.3G392100.1 No alias Kinesin-14-type motor protein 0.03 Orthogroups_2024-Update
Sopen06g026410 No alias Kinesin motor domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0007018 microtubule-based movement IEA InterProScan predictions
MF GO:0008017 microtubule binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001752 Kinesin_motor_dom 327 650
IPR001715 CH-domain 68 177
No external refs found!