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  5. PSME_00052725-RA

PSME_00052725-RA


Description : (p09444|lea34_goshi : 188.0) Late embryogenesis abundant protein D-34 (LEA D-34) - Gossypium hirsutum (Upland cotton) & (at3g22490 : 177.0) Seed maturation protein; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: Seed maturation protein (TAIR:AT3G22500.1); Has 198 Blast hits to 183 proteins in 40 species: Archae - 2; Bacteria - 41; Metazoa - 7; Fungi - 0; Plants - 144; Viruses - 3; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description)


Gene families : OG_42_0000888 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000888_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052725-RA
Cluster HCCA clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
At3g22500 No alias Late embryogenesis abundant protein 32... 0.03 Orthogroups_2024-Update
Glyma.10G027600 No alias Seed maturation protein 0.02 Orthogroups_2024-Update
LOC_Os03g06360 No alias late embryogenesis abundant protein D-34, putative, expressed 0.02 Orthogroups_2024-Update
Sobic.004G195900.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc09g082110 No alias Seed maturation protein/ Late embryogenesis abundant... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004057 arginyltransferase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0016598 protein arginylation IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007011 SMP 197 255
IPR007011 SMP 20 74
IPR007011 SMP 133 190
No external refs found!