Description : (at3g09040 : 614.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 73401 Blast hits to 14698 proteins in 289 species: Archae - 0; Bacteria - 19; Metazoa - 251; Fungi - 280; Plants - 71776; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink). & (q76c99|rf1_orysa : 105.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1228.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00052756-RA | |
Cluster | HCCA clusters: Cluster_210 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
51483 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
82255 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
A4A49_17130 | No alias | pentatricopeptide repeat-containing protein dot4, chloroplastic | 0.02 | Orthogroups_2024-Update | |
A4A49_18851 | No alias | pentatricopeptide repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
A4A49_19306 | No alias | pentatricopeptide repeat-containing protein,... | 0.03 | Orthogroups_2024-Update | |
A4A49_21718 | No alias | pentatricopeptide repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
At4g37380 | No alias | Pentatricopeptide repeat-containing protein ELI1,... | 0.03 | Orthogroups_2024-Update | |
Bradi2g37360 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g37252 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.A02436.1 | No alias | RNA editing factor *(CRR2) | 0.03 | Orthogroups_2024-Update | |
GRMZM2G103078 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G154743 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G481373 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.02G087100 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.04G129100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.15G073600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G028520.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU4Hr1G014730.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os01g19380 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os02g50280 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os03g64370 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os05g36350 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os09g39970 | No alias | expressed protein | 0.02 | Orthogroups_2024-Update | |
LOC_Os12g01850 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os12g08140 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_11759g0010 | No alias | (at4g13650 : 566.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00013106-RA | No alias | (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
Potri.006G001200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.008G106500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.013G058900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.018G071800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Pp1s26_188V6 | No alias | No description available | 0.03 | Orthogroups_2024-Update | |
Seita.3G244400.1 | No alias | RNA editing factor *(MEF32) | 0.02 | Orthogroups_2024-Update | |
Sobic.002G403500.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.003G380100.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Sobic.004G174800.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.005G210700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc04g076330 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
Sopen01g032600 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen03g033730 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen11g024580 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003774 | motor activity | IEP | Predicted GO |
MF | GO:0003777 | microtubule motor activity | IEP | Predicted GO |
MF | GO:0003779 | actin binding | IEP | Predicted GO |
MF | GO:0004425 | indole-3-glycerol-phosphate synthase activity | IEP | Predicted GO |
MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Predicted GO |
MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006553 | lysine metabolic process | IEP | Predicted GO |
BP | GO:0006928 | movement of cell or subcellular component | IEP | Predicted GO |
BP | GO:0007017 | microtubule-based process | IEP | Predicted GO |
BP | GO:0007018 | microtubule-based movement | IEP | Predicted GO |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Predicted GO |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Predicted GO |
MF | GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | IEP | Predicted GO |
BP | GO:0009085 | lysine biosynthetic process | IEP | Predicted GO |
BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | Predicted GO |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Predicted GO |
MF | GO:0020037 | heme binding | IEP | Predicted GO |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Predicted GO |
BP | GO:0042255 | ribosome assembly | IEP | Predicted GO |
BP | GO:0042256 | mature ribosome assembly | IEP | Predicted GO |
MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Predicted GO |
MF | GO:0043022 | ribosome binding | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Predicted GO |
MF | GO:0044877 | protein-containing complex binding | IEP | Predicted GO |
BP | GO:0046451 | diaminopimelate metabolic process | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
BP | GO:0070925 | organelle assembly | IEP | Predicted GO |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 940 | 963 |
IPR002885 | Pentatricopeptide_repeat | 536 | 562 |
IPR002885 | Pentatricopeptide_repeat | 564 | 587 |
IPR002885 | Pentatricopeptide_repeat | 637 | 664 |
IPR002885 | Pentatricopeptide_repeat | 665 | 690 |
IPR002885 | Pentatricopeptide_repeat | 435 | 460 |
IPR002885 | Pentatricopeptide_repeat | 363 | 392 |
IPR002885 | Pentatricopeptide_repeat | 764 | 811 |
IPR002885 | Pentatricopeptide_repeat | 865 | 912 |
IPR002885 | Pentatricopeptide_repeat | 157 | 205 |
IPR002885 | Pentatricopeptide_repeat | 259 | 305 |
IPR002885 | Pentatricopeptide_repeat | 461 | 508 |
No external refs found! |