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  5. PSME_00052954-RA

PSME_00052954-RA


Description : (at4g13650 : 543.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 118.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1086.0) & (original description: no original description)


Gene families : OG_42_0009208 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009208_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00052954-RA

Target Alias Description ECC score Gene Family Method Actions
At3g47840 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
GRMZM5G851564 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Glyma.03G081800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G151600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Seita.3G132900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G245600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g068630 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen02g017800 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 501 548
IPR002885 Pentatricopeptide_repeat 97 144
IPR002885 Pentatricopeptide_repeat 197 245
IPR002885 Pentatricopeptide_repeat 299 346
IPR002885 Pentatricopeptide_repeat 400 446
IPR002885 Pentatricopeptide_repeat 475 500
IPR002885 Pentatricopeptide_repeat 577 599
IPR002885 Pentatricopeptide_repeat 71 92
IPR032867 DYW_dom 674 731
No external refs found!