PSME_00053051-RA

Description : no hits & (original description: no original description)

Gene families : OG_42_0000078 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00053051-RA
Cluster	HCCA clusters: Cluster_183

Target	Alias	Description	ECC score	Gene Family Method
Bradi4g20547	No alias	Mitochondrial transcription termination factor family protein	0.02	Orthogroups_2024-Update
Brara.D00047.1	No alias	mTERF-type transcription factor	0.04	Orthogroups_2024-Update
Brara.I01480.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
PSME_00020295-RA	No alias	(at5g64950 : 119.0) Mitochondrial transcription...	0.04	Orthogroups_2024-Update
PSME_00030169-RA	No alias	(at1g79220 : 119.0) Mitochondrial transcription...	0.04	Orthogroups_2024-Update
PSME_00056194-RA	No alias	(at5g64950 : 106.0) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
Potri.001G035200	No alias	Mitochondrial transcription termination factor family protein	0.03	Orthogroups_2024-Update
Seita.4G095400.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004602	glutathione peroxidase activity	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003690	MTERF	197	288

External Links

No external refs found!

PSME_00053051-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation