PSME_00053123-RA

Description : (at5g53950 : 278.0) Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.; CUP-SHAPED COTYLEDON 2 (CUC2); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT3G15170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q5cd17|nac77_orysa : 217.0) NAC domain-containing protein 77 (ONAC077) (ONAC300) - Oryza sativa (Rice) & (reliability: 528.0) & (original description: no original description)

Gene families : OG_42_0000017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00053123-RA
Cluster	HCCA clusters: Cluster_246

Target	Alias	Description	ECC score	Gene Family Method
A4A49_24132	No alias	nac domain-containing protein 78	0.03	Orthogroups_2024-Update
A4A49_25058	No alias	nac domain-containing protein 86	0.03	Orthogroups_2024-Update
A4A49_29314	No alias	nac domain-containing protein 43	0.03	Orthogroups_2024-Update
A4A49_58267	No alias	hypothetical protein	0.03	Orthogroups_2024-Update
At1g33060	No alias	NAC014 [Source:UniProtKB/TrEMBL;Acc:A0A178WRQ2]	0.03	Orthogroups_2024-Update
At3g61910	No alias	NAC domain-containing protein 66...	0.04	Orthogroups_2024-Update
At5g17260	No alias	NAC domain-containing protein 86...	0.02	Orthogroups_2024-Update
At5g22290	No alias	NAC domain-containing protein 89...	0.03	Orthogroups_2024-Update
At5g61430	No alias	NAC domain-containing protein 100...	0.03	Orthogroups_2024-Update
Bradi3g09520	No alias	NAC (No Apical Meristem) domain transcriptional...	0.02	Orthogroups_2024-Update
Bradi5g16917	No alias	NAC 007	0.02	Orthogroups_2024-Update
Brara.A00235.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.B01408.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.F03105.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Brara.G01268.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.G02072.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.I02350.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G018436	No alias	Arabidopsis NAC domain containing protein 87	0.02	Orthogroups_2024-Update
GRMZM5G885329	No alias	NAC domain containing protein 57	0.02	Orthogroups_2024-Update
Glyma.07G050600	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Glyma.12G186851	No alias	NTM1-like 8	0.02	Orthogroups_2024-Update
Glyma.12G226500	No alias	NAC (No Apical Meristem) domain transcriptional...	0.02	Orthogroups_2024-Update
Glyma.16G019400	No alias	NAC (No Apical Meristem) domain transcriptional...	0.05	Orthogroups_2024-Update
Glyma.19G024500	No alias	NAC domain containing protein 100	0.03	Orthogroups_2024-Update
HORVU0Hr1G000630.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
HORVU2Hr1G017350.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
HORVU2Hr1G017380.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
HORVU5Hr1G045640.7	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
HORVU7Hr1G075550.1	No alias	NAC-type transcription factor & transcriptional...	0.01	Orthogroups_2024-Update
LOC_Os02g15340	No alias	no apical meristem protein, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os07g48550	No alias	no apical meristem protein, putative, expressed	0.03	Orthogroups_2024-Update
MA_109677g0010	No alias	(at5g61430 : 282.0) NAC domain containing protein 100...	0.03	Orthogroups_2024-Update
MA_15204g0010	No alias	(at3g03200 : 250.0) NAC domain containing protein 45...	0.04	Orthogroups_2024-Update
Mp4g11910.1	No alias	transcription factor (NAC)	0.02	Orthogroups_2024-Update
PSME_00009079-RA	No alias	(at1g65910 : 290.0) NAC domain containing protein 28...	0.06	Orthogroups_2024-Update
Potri.001G144400	No alias	NAC domain containing protein 96	0.03	Orthogroups_2024-Update
Potri.001G396300	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Potri.010G176600	No alias	NAC (No Apical Meristem) domain transcriptional...	0.03	Orthogroups_2024-Update
Potri.012G001400	No alias	NAC domain containing protein 100	0.04	Orthogroups_2024-Update
Potri.013G054200	No alias	Arabidopsis NAC domain containing protein 87	0.02	Orthogroups_2024-Update
Potri.015G004100	No alias	NAC domain containing protein 62	0.03	Orthogroups_2024-Update
Potri.015G030200	No alias	NAC domain containing protein 57	0.03	Orthogroups_2024-Update
Pp1s288_4V6	No alias	no apical meristem	0.02	Orthogroups_2024-Update
Seita.5G403000.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.001G386000.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.002G290900.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.004G112200.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.005G018700.1	No alias	NAC-type transcription factor	0.04	Orthogroups_2024-Update
Solyc02g084350	No alias	NAC domain-containing protein, putative (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Solyc08g079120	No alias	NAC domain protein, (AHRD V3.3 *** A0A061G3J0_THECC)	0.02	Orthogroups_2024-Update
Solyc11g008000	No alias	NAC domain protein, (AHRD V3.3 *** A0A061FNG1_THECC)	0.04	Orthogroups_2024-Update
Sopen03g034840	No alias	No apical meristem (NAM) protein	0.02	Orthogroups_2024-Update
Sopen05g033920	No alias	No apical meristem (NAM) protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001871	pattern binding	IEP	Predicted GO
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0004497	monooxygenase activity	IEP	Predicted GO
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
BP	GO:0006281	DNA repair	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Predicted GO
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Predicted GO
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030247	polysaccharide binding	IEP	Predicted GO
BP	GO:0033554	cellular response to stress	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predicted GO
MF	GO:0050661	NADP binding	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
BP	GO:0051716	cellular response to stimulus	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003441	NAC-dom	21	147

External Links

No external refs found!

PSME_00053123-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation