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  5. PSME_00053148-RA

PSME_00053148-RA


Description : (at1g12210 : 218.0) RFL1 has high sequence similarity to the adjacent disease resistance (R) gene RPS5.; RPS5-like 1 (RFL1); FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, response to bacterium, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, embryo, sepal, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 18050 Blast hits to 15832 proteins in 638 species: Archae - 19; Bacteria - 1098; Metazoa - 2850; Fungi - 219; Plants - 13503; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink). & (reliability: 436.0) & (original description: no original description)


Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00053148-RA
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Brara.H02820.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I01184.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I03326.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G089020.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os09g10054 No alias disease resistance protein RPS2, putative, expressed 0.02 Orthogroups_2024-Update
MA_10059887g0010 No alias (at1g12220 : 207.0) Resistance gene, mediates resistance... 0.03 Orthogroups_2024-Update
MA_10062820g0010 No alias (at1g12280 : 143.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
MA_10428221g0010 No alias (at1g12280 : 159.0) LRR and NB-ARC domains-containing... 0.03 Orthogroups_2024-Update
MA_122523g0010 No alias (at1g12210 : 224.0) RFL1 has high sequence similarity to... 0.03 Orthogroups_2024-Update
MA_13844g0010 No alias (at4g26090 : 202.0) Encodes a plasma membrane protein... 0.03 Orthogroups_2024-Update
MA_5183807g0010 No alias (at4g10780 : 85.5) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
MA_53162g0020 No alias (at5g43740 : 114.0) Disease resistance protein... 0.03 Orthogroups_2024-Update
MA_8325275g0010 No alias (at1g12220 : 93.2) Resistance gene, mediates resistance... 0.03 Orthogroups_2024-Update
PSME_00004005-RA No alias (at1g15890 : 219.0) Disease resistance protein... 0.04 Orthogroups_2024-Update
PSME_00011883-RA No alias (at4g27220 : 218.0) NB-ARC domain-containing disease... 0.04 Orthogroups_2024-Update
PSME_00018989-RA No alias (at4g26090 : 240.0) Encodes a plasma membrane protein... 0.04 Orthogroups_2024-Update
PSME_00027124-RA No alias (at4g10780 : 169.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
PSME_00027915-RA No alias (at1g15890 : 191.0) Disease resistance protein... 0.04 Orthogroups_2024-Update
PSME_00033628-RA No alias (at4g27220 : 254.0) NB-ARC domain-containing disease... 0.04 Orthogroups_2024-Update
PSME_00050940-RA No alias (at1g12280 : 221.0) LRR and NB-ARC domains-containing... 0.03 Orthogroups_2024-Update
PSME_00053104-RA No alias (at1g12280 : 173.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
Potri.T014500 No alias LRR and NB-ARC domains-containing disease resistance protein 0.02 Orthogroups_2024-Update
Seita.7G164900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0043531 ADP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0007050 cell cycle arrest IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 574 630
IPR002182 NB-ARC 184 426
No external refs found!