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  5. Solyc02g071300

Solyc02g071300


Description : Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** A0A061GEI5_THECC)


Gene families : OG_42_0009200 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009200_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g071300
Cluster HCCA clusters: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
Sobic.001G520700.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 180 227
IPR002885 Pentatricopeptide_repeat 281 328
IPR002885 Pentatricopeptide_repeat 120 149
IPR002885 Pentatricopeptide_repeat 419 442
IPR002885 Pentatricopeptide_repeat 384 412
IPR002885 Pentatricopeptide_repeat 61 84
IPR002885 Pentatricopeptide_repeat 89 119
IPR002885 Pentatricopeptide_repeat 456 481
IPR032867 DYW_dom 555 678
No external refs found!