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  5. PSME_00053192-RA

PSME_00053192-RA


Description : (at1g52880 : 257.0) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.; NO APICAL MERISTEM (NAM); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT3G15510.1); Has 3040 Blast hits to 3032 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3034; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (q52qh4|nac68_orysa : 234.0) NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice) & (reliability: 512.0) & (original description: no original description)


Gene families : OG_42_0000084 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000084_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00053192-RA
Cluster HCCA clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Bradi4g07527 No alias NAC domain containing protein 47 0.02 Orthogroups_2024-Update
Bradi5g18044 No alias NAC domain containing protein 32 0.02 Orthogroups_2024-Update
Brara.A03131.1 No alias NAC-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.06G157400 No alias NAC (No Apical Meristem) domain transcriptional... 0.03 Orthogroups_2024-Update
PSME_00001412-RA No alias (at2g02450 : 284.0) NAC domain containing protein 35... 0.03 Orthogroups_2024-Update
PSME_00019789-RA No alias (at3g15510 : 264.0) Note of caution: not to be confused... 0.03 Orthogroups_2024-Update
Seita.5G405100.1 No alias NAC-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G080100.1 No alias NAC-type transcription factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
InterPro domains Description Start Stop
IPR003441 NAC-dom 16 145
No external refs found!