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  5. PSME_00053215-RA

PSME_00053215-RA


Description : (at4g17490 : 92.0) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.; ethylene responsive element binding factor 6 (ERF6); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 5 (TAIR:AT5G47230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q40478|erf5_tobac : 89.7) Ethylene-responsive transcription factor 5 (Ethylene-responsive element-binding factor 5 homolog) (EREBP-4) (NtERF4) - Nicotiana tabacum (Common tobacco) & (reliability: 184.0) & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00053215-RA
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
A4A49_20932 No alias ethylene-responsive transcription factor erf114 0.02 Orthogroups_2024-Update
A4A49_30738 No alias ethylene-responsive transcription factor abr1 0.02 Orthogroups_2024-Update
A4A49_42272 No alias ethylene-responsive transcription factor 4 0.03 Orthogroups_2024-Update
Bradi2g52370 No alias erf domain protein 9 0.01 Orthogroups_2024-Update
Bradi3g41543 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g08380 No alias related to AP2 6l 0.01 Orthogroups_2024-Update
Bradi5g17610 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Brara.C00977.1 No alias subgroup ERF-II transcription factor *(ERF16/17/18) 0.03 Orthogroups_2024-Update
GRMZM2G149756 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G028300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G295300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G162700 No alias ethylene responsive element binding factor 4 0.03 Orthogroups_2024-Update
LOC_Os09g11460 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_166248g0020 No alias (at4g17500 : 128.0) Encodes a member of the ERF... 0.03 Orthogroups_2024-Update
PSME_00008897-RA No alias (at4g17500 : 88.2) Encodes a member of the ERF (ethylene... 0.04 Orthogroups_2024-Update
PSME_00009547-RA No alias (at4g17500 : 103.0) Encodes a member of the ERF... 0.04 Orthogroups_2024-Update
PSME_00037533-RA No alias (at5g61890 : 108.0) encodes a member of the ERF... 0.04 Orthogroups_2024-Update
PSME_00041322-RA No alias (q40476|erf1_tobac : 120.0) Ethylene-responsive... 0.05 Orthogroups_2024-Update
PSME_00047383-RA No alias (at5g21960 : 119.0) encodes a member of the DREB... 0.01 Orthogroups_2024-Update
PSME_00048384-RA No alias (at5g11190 : 113.0) encodes a member of the ERF... 0.04 Orthogroups_2024-Update
PSME_00056166-RA No alias (at5g11590 : 103.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
PSME_00056344-RA No alias (at2g36450 : 117.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
Potri.018G131400 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Sobic.001G481300.1 No alias subgroup ERF-VII transcription factor 0.02 Orthogroups_2024-Update
Solyc02g077360 No alias Ethylene Response Factor B.2 0.02 Orthogroups_2024-Update
Solyc04g054910 No alias Ethylene-responsive element binding-factor (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen02g037700 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen03g035520 No alias AP2 domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006606 protein import into nucleus IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 111 161
No external refs found!