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  5. PSME_00053226-RA

PSME_00053226-RA


Description : (at2g02230 : 145.0) phloem protein 2-B1 (PP2-B1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1); Has 552 Blast hits to 533 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 552; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description)


Gene families : OG_42_0000141 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000141_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00053226-RA
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Bradi3g17208 No alias phloem protein 2-B10 0.02 Orthogroups_2024-Update
Glyma.07G222500 No alias phloem protein 2-A1 0.02 Orthogroups_2024-Update
Glyma.14G073300 No alias phloem protein 2-B10 0.02 Orthogroups_2024-Update
MA_22084g0010 No alias (at2g02240 : 194.0) maternal effect embryo arrest 66... 0.02 Orthogroups_2024-Update
PSME_00025236-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00033255-RA No alias (at2g02240 : 94.7) maternal effect embryo arrest 66... 0.01 Orthogroups_2024-Update
PSME_00043920-RA No alias (at1g09155 : 152.0) phloem protein 2-B15 (PP2-B15);... 0.04 Orthogroups_2024-Update
PSME_00050854-RA No alias (at2g02240 : 154.0) maternal effect embryo arrest 66... 0.05 Orthogroups_2024-Update
PSME_00052353-RA No alias (at2g02230 : 141.0) phloem protein 2-B1 (PP2-B1);... 0.05 Orthogroups_2024-Update
Solyc12g096890 No alias F-box protein PP2 (AHRD V3.3 *** A0A059PC27_CICAR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 16 57
IPR025886 PP2-like 108 279
No external refs found!