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  5. PSME_00053247-RA

PSME_00053247-RA


Description : (at5g01750 : 174.0) Protein of unknown function (DUF567); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT3G11740.1); Has 468 Blast hits to 466 proteins in 44 species: Archae - 0; Bacteria - 29; Metazoa - 0; Fungi - 27; Plants - 412; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description)


Gene families : OG_42_0000351 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000351_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00053247-RA

Target Alias Description ECC score Gene Family Method Actions
410475 No alias Protein of unknown function (DUF567) 0.03 Orthogroups_2024-Update
A4A49_40421 No alias protein lurp-one-related 15 0.02 Orthogroups_2024-Update
Bradi1g04010 No alias Protein of unknown function (DUF567) 0.03 Orthogroups_2024-Update
Glyma.01G129100 No alias Protein of unknown function (DUF567) 0.04 Orthogroups_2024-Update
Glyma.03G040900 No alias Protein of unknown function (DUF567) 0.05 Orthogroups_2024-Update
LOC_Os07g12730 No alias DUF567 domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp2g03380.1 No alias Protein LURP-one-related 15 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Mp5g19330.1 No alias Protein LURP-one-related 15 OS=Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Seita.2G090100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G394500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen10g034870 No alias Tubby C 2 0.02 Orthogroups_2024-Update
evm.model.tig00021612.39 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004126 cytidine deaminase activity IEP Predicted GO
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Predicted GO
BP GO:0006216 cytidine catabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009164 nucleoside catabolic process IEP Predicted GO
BP GO:0009972 cytidine deamination IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0042454 ribonucleoside catabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
BP GO:0046087 cytidine metabolic process IEP Predicted GO
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Predicted GO
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
BP GO:1901658 glycosyl compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007612 LOR 17 192
No external refs found!