1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00053285-RA

PSME_00053285-RA


Description : (at4g38620 : 263.0) Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.; myb domain protein 4 (MYB4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 32 (TAIR:AT4G34990.1); Has 9208 Blast hits to 8453 proteins in 515 species: Archae - 0; Bacteria - 0; Metazoa - 855; Fungi - 510; Plants - 6018; Viruses - 3; Other Eukaryotes - 1822 (source: NCBI BLink). & (p20026|myb1_horvu : 257.0) Myb-related protein Hv1 - Hordeum vulgare (Barley) & (reliability: 526.0) & (original description: no original description)


Gene families : OG_42_0000002 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00053285-RA
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
90153 No alias myb domain protein 55 0.01 Orthogroups_2024-Update
A4A49_01152 No alias transcription factor myb36 0.02 Orthogroups_2024-Update
A4A49_10737 No alias myb-related protein myb4 0.01 Orthogroups_2024-Update
A4A49_12018 No alias transcription factor myb30 0.04 Orthogroups_2024-Update
A4A49_12286 No alias transcription factor myb30 0.03 Orthogroups_2024-Update
A4A49_12677 No alias myb-related protein pp2 0.04 Orthogroups_2024-Update
A4A49_12817 No alias myb-related protein pp2 0.01 Orthogroups_2024-Update
A4A49_20218 No alias transcription factor myb39 0.01 Orthogroups_2024-Update
A4A49_24839 No alias transcription factor gamyb 0.02 Orthogroups_2024-Update
A4A49_39488 No alias myb-related protein pp2 0.03 Orthogroups_2024-Update
At1g06180 No alias Transcription factor MYB13... 0.02 Orthogroups_2024-Update
At1g09540 No alias MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4] 0.01 Orthogroups_2024-Update
At1g25340 No alias myb domain protein 116 [Source:TAIR;Acc:AT1G25340] 0.02 Orthogroups_2024-Update
At1g56160 No alias MYB72 [Source:UniProtKB/TrEMBL;Acc:A0A178W4I7] 0.07 Orthogroups_2024-Update
At1g57560 No alias At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695] 0.03 Orthogroups_2024-Update
At4g01680 No alias Myb domain protein 55 [Source:UniProtKB/TrEMBL;Acc:Q9ZSI4] 0.02 Orthogroups_2024-Update
At4g26930 No alias Transcription factor MYB97... 0.04 Orthogroups_2024-Update
At4g34990 No alias Transcription factor MYB32... 0.01 Orthogroups_2024-Update
At5g10280 No alias Transcription factor MYB92... 0.02 Orthogroups_2024-Update
At5g14340 No alias myb domain protein 40 [Source:TAIR;Acc:AT5G14340] 0.02 Orthogroups_2024-Update
At5g52260 No alias MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5] 0.01 Orthogroups_2024-Update
At5g56110 No alias MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75] 0.01 Orthogroups_2024-Update
At5g57620 No alias Transcription factor MYB36... 0.02 Orthogroups_2024-Update
At5g62470 No alias Transcription factor MYB96... 0.04 Orthogroups_2024-Update
Bradi1g61160 No alias myb domain protein 96 0.05 Orthogroups_2024-Update
Bradi1g64687 No alias myb domain protein 12 0.03 Orthogroups_2024-Update
Bradi2g24400 No alias myb domain protein 6 0.03 Orthogroups_2024-Update
Bradi3g18977 No alias myb domain protein 36 0.03 Orthogroups_2024-Update
Bradi4g22637 No alias myb domain protein 94 0.04 Orthogroups_2024-Update
Bradi4g29796 No alias myb domain protein 20 0.02 Orthogroups_2024-Update
Bradi4g30220 No alias myb domain protein 94 0.03 Orthogroups_2024-Update
Bradi5g16672 No alias myb domain protein 19 0.05 Orthogroups_2024-Update
Bradi5g20130 No alias myb domain protein 63 0.02 Orthogroups_2024-Update
Brara.A00330.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.01 Orthogroups_2024-Update
Brara.A03909.1 No alias MYB class-R2R3 subgroup-8 transcription factor 0.03 Orthogroups_2024-Update
Brara.B00568.1 No alias MYB class-R2R3 subgroup-15 transcription factor 0.01 Orthogroups_2024-Update
Brara.B00668.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Brara.B01349.1 No alias MYB class-R2R3 subgroup-18 transcription factor 0.01 Orthogroups_2024-Update
Brara.C01072.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F02919.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.01 Orthogroups_2024-Update
Brara.G03164.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.02 Orthogroups_2024-Update
Brara.G03210.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Brara.H00653.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Brara.H02815.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.02 Orthogroups_2024-Update
Brara.I00299.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.02 Orthogroups_2024-Update
Brara.I00301.1 No alias MYB class-R2R3 subgroup-15 transcription factor 0.02 Orthogroups_2024-Update
Brara.I00351.1 No alias MYB class-R2R3 transcription factor 0.01 Orthogroups_2024-Update
Brara.J01962.1 No alias MYB class-R2R3 subgroup-8 transcription factor &... 0.02 Orthogroups_2024-Update
GRMZM2G159547 No alias myb domain protein 93 0.04 Orthogroups_2024-Update
GRMZM2G160838 No alias myb domain protein 4 0.02 Orthogroups_2024-Update
GRMZM2G177760 No alias myb domain protein 43 0.03 Orthogroups_2024-Update
GRMZM2G395672 No alias myb domain protein 5 0.02 Orthogroups_2024-Update
Glyma.01G222200 No alias myb domain protein 103 0.02 Orthogroups_2024-Update
Glyma.03G163100 No alias myb domain protein 15 0.01 Orthogroups_2024-Update
Glyma.05G027000 No alias myb domain protein 94 0.02 Orthogroups_2024-Update
Glyma.06G193600 No alias myb domain protein 94 0.02 Orthogroups_2024-Update
Glyma.06G300300 No alias myb domain protein 15 0.03 Orthogroups_2024-Update
Glyma.07G126900 No alias myb domain protein 68 0.02 Orthogroups_2024-Update
Glyma.07G242600 No alias myb domain protein 111 0.03 Orthogroups_2024-Update
Glyma.08G168100 No alias myb domain protein 63 0.04 Orthogroups_2024-Update
Glyma.10G180800 No alias myb domain protein 15 0.04 Orthogroups_2024-Update
Glyma.10G236600 No alias myb domain protein 45 0.04 Orthogroups_2024-Update
Glyma.11G009400 No alias myb domain protein 107 0.02 Orthogroups_2024-Update
Glyma.12G066000 No alias myb domain protein 59 0.03 Orthogroups_2024-Update
Glyma.12G106400 No alias MYB-like 102 0.01 Orthogroups_2024-Update
Glyma.13G066600 No alias Duplicated homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G187500 No alias myb domain protein 33 0.03 Orthogroups_2024-Update
Glyma.14G069100 No alias myb domain protein 4 0.02 Orthogroups_2024-Update
Glyma.15G041100 No alias myb domain protein 48 0.02 Orthogroups_2024-Update
Glyma.15G144000 No alias myb domain protein 111 0.03 Orthogroups_2024-Update
Glyma.15G264000 No alias myb domain protein 67 0.01 Orthogroups_2024-Update
Glyma.16G007100 No alias myb domain protein 6 0.01 Orthogroups_2024-Update
Glyma.16G023000 No alias myb domain protein 111 0.04 Orthogroups_2024-Update
HORVU0Hr1G005100.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
HORVU7Hr1G057410.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.02 Orthogroups_2024-Update
LOC_Os03g18480 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g50770 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g48010 No alias MYB family transcription factor, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os07g30130 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g44090 No alias myb-related protein Hv33, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g05520 No alias myb-like DNA-binding domain containing protein,... 0.01 Orthogroups_2024-Update
LOC_Os08g33940 No alias MYB family transcription factor, putative, expressed 0.01 Orthogroups_2024-Update
MA_10048467g0010 No alias (at5g35550 : 171.0) TT2 encodes a R2R3 MYB domain... 0.02 Orthogroups_2024-Update
MA_101790g0010 No alias (at4g38620 : 241.0) Encodes a R2R3 MYB protein which is... 0.05 Orthogroups_2024-Update
MA_10429682g0010 No alias (p20026|myb1_horvu : 172.0) Myb-related protein Hv1 -... 0.01 Orthogroups_2024-Update
MA_10435612g0010 No alias (at5g15310 : 300.0) Member of the R2R3 factor gene... 0.02 Orthogroups_2024-Update
MA_139238g0010 No alias (at1g09540 : 266.0) Encodes putative transcription... 0.01 Orthogroups_2024-Update
MA_14061g0010 No alias (at5g57620 : 229.0) Encodes a putative transcription... 0.01 Orthogroups_2024-Update
MA_175772g0010 No alias (at1g22640 : 206.0) MYB-type transcription factor (MYB3)... 0.01 Orthogroups_2024-Update
MA_190973g0010 No alias (p20026|myb1_horvu : 239.0) Myb-related protein Hv1 -... 0.01 Orthogroups_2024-Update
MA_246142g0010 No alias (at4g38620 : 256.0) Encodes a R2R3 MYB protein which is... 0.04 Orthogroups_2024-Update
MA_308669g0010 No alias (p20025|myb38_maize : 236.0) Myb-related protein Zm38 -... 0.01 Orthogroups_2024-Update
MA_355131g0010 No alias (at3g28910 : 186.0) transcription factor myb homologue;... 0.02 Orthogroups_2024-Update
MA_37058g0010 No alias (at5g35550 : 158.0) TT2 encodes a R2R3 MYB domain... 0.02 Orthogroups_2024-Update
MA_7261g0010 No alias (at3g12720 : 147.0) Member of the R2R3 factor gene... 0.04 Orthogroups_2024-Update
MA_8626g0010 No alias (at1g22640 : 166.0) MYB-type transcription factor (MYB3)... 0.02 Orthogroups_2024-Update
MA_93127g0010 No alias (at4g38620 : 220.0) Encodes a R2R3 MYB protein which is... 0.02 Orthogroups_2024-Update
MA_94467g0010 No alias (at3g13540 : 228.0) Encodes a member of the MYB family... 0.04 Orthogroups_2024-Update
PSME_00010370-RA No alias (at5g62470 : 192.0) Encodes a R2R3 type Myb... 0.02 Orthogroups_2024-Update
PSME_00010957-RA No alias (at3g61250 : 269.0) Member of the R2R3 factor gene... 0.02 Orthogroups_2024-Update
PSME_00013409-RA No alias "(at2g47460 : 185.0) ""MYB12 belongs to subgroup 7 of... 0.02 Orthogroups_2024-Update
PSME_00013410-RA No alias (at5g35550 : 181.0) TT2 encodes a R2R3 MYB domain... 0.02 Orthogroups_2024-Update
PSME_00014640-RA No alias (at3g27810 : 179.0) Encodes a member of the R2R3-MYB... 0.01 Orthogroups_2024-Update
PSME_00017280-RA No alias (at1g22640 : 187.0) MYB-type transcription factor (MYB3)... 0.03 Orthogroups_2024-Update
PSME_00017439-RA No alias (at3g13540 : 222.0) Encodes a member of the MYB family... 0.01 Orthogroups_2024-Update
PSME_00018495-RA No alias (at3g02940 : 176.0) Encodes a putative transcription... 0.01 Orthogroups_2024-Update
PSME_00023733-RA No alias (at1g22640 : 175.0) MYB-type transcription factor (MYB3)... 0.03 Orthogroups_2024-Update
PSME_00028766-RA No alias (at3g01140 : 277.0) Encodes a MIXTA-like MYB gene NOECK... 0.03 Orthogroups_2024-Update
PSME_00029148-RA No alias (at3g61250 : 258.0) Member of the R2R3 factor gene... 0.01 Orthogroups_2024-Update
PSME_00031160-RA No alias (at4g38620 : 228.0) Encodes a R2R3 MYB protein which is... 0.02 Orthogroups_2024-Update
PSME_00036270-RA No alias (at5g65790 : 241.0) Encodes a putative MYB transcription... 0.01 Orthogroups_2024-Update
PSME_00041970-RA No alias (at1g22640 : 188.0) MYB-type transcription factor (MYB3)... 0.02 Orthogroups_2024-Update
PSME_00049306-RA No alias (at5g15310 : 258.0) Member of the R2R3 factor gene... 0.05 Orthogroups_2024-Update
PSME_00051224-RA No alias (at5g15310 : 212.0) Member of the R2R3 factor gene... 0.01 Orthogroups_2024-Update
PSME_00051333-RA No alias (at1g68320 : 167.0) putative transcription factor:... 0.01 Orthogroups_2024-Update
PSME_00051405-RA No alias (at3g46130 : 174.0) Encodes a putative transcription... 0.02 Orthogroups_2024-Update
PSME_00052652-RA No alias (p20025|myb38_maize : 250.0) Myb-related protein Zm38 -... 0.02 Orthogroups_2024-Update
Potri.001G075400 No alias myb domain protein 67 0.01 Orthogroups_2024-Update
Potri.002G228700 No alias myb domain protein 101 0.02 Orthogroups_2024-Update
Potri.003G114100 No alias myb domain protein 42 0.01 Orthogroups_2024-Update
Potri.004G215100 No alias myb domain protein 36 0.02 Orthogroups_2024-Update
Potri.005G001600 No alias myb domain protein 61 0.01 Orthogroups_2024-Update
Potri.006G122100 No alias myb domain protein 27 0.01 Orthogroups_2024-Update
Potri.006G275900 No alias myb domain protein 3 0.01 Orthogroups_2024-Update
Potri.007G067600 No alias myb domain protein 63 0.02 Orthogroups_2024-Update
Potri.009G007100 No alias myb domain protein 36 0.01 Orthogroups_2024-Update
Potri.012G127700 No alias myb domain protein 42 0.01 Orthogroups_2024-Update
Potri.012G140500 No alias myb domain protein 19 0.01 Orthogroups_2024-Update
Potri.013G056500 No alias myb domain protein 5 0.02 Orthogroups_2024-Update
Potri.013G149100 No alias myb domain protein 15 0.01 Orthogroups_2024-Update
Potri.013G149200 No alias myb domain protein 14 0.02 Orthogroups_2024-Update
Potri.014G100800 No alias myb domain protein 7 0.02 Orthogroups_2024-Update
Potri.017G075000 No alias Duplicated homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G086300 No alias myb domain protein 16 0.03 Orthogroups_2024-Update
Potri.017G099500 No alias myb domain protein 121 0.01 Orthogroups_2024-Update
Potri.018G058800 No alias myb domain protein 84 0.01 Orthogroups_2024-Update
Potri.018G095900 No alias myb domain protein 36 0.02 Orthogroups_2024-Update
Potri.019G018200 No alias myb domain protein 15 0.02 Orthogroups_2024-Update
Potri.019G050900 No alias myb domain protein 9 0.03 Orthogroups_2024-Update
Potri.019G118700 No alias myb domain protein 9 0.01 Orthogroups_2024-Update
Pp1s1_78V6 No alias atmyb16 (myb domain protein 16) dna binding transcription factor 0.01 Orthogroups_2024-Update
Pp1s284_57V6 No alias MDA7.17; myb family transcription factor [Arabidopsis thaliana] 0.01 Orthogroups_2024-Update
Pp1s371_6V6 No alias myb transcription factor myb92 0.07 Orthogroups_2024-Update
Pp1s46_302V6 No alias MDA7.17; myb family transcription factor [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Pp1s65_211V6 No alias MDA7.17; myb family transcription factor [Arabidopsis thaliana] 0.01 Orthogroups_2024-Update
Sobic.001G358900.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.01 Orthogroups_2024-Update
Sobic.003G034500.1 No alias MYB class-R2R3 subgroup-14 transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G216900.1 No alias MYB class-R2R3 transcription factor 0.01 Orthogroups_2024-Update
Sobic.004G231700.1 No alias MYB class-R2R3 subgroup-10/24 transcription factor 0.04 Orthogroups_2024-Update
Sobic.007G039100.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Sobic.008G055800.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.03 Orthogroups_2024-Update
Sobic.009G031900.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.04 Orthogroups_2024-Update
Sobic.009G036500.3 No alias MYB class-R2R3 subgroup-13 transcription factor 0.05 Orthogroups_2024-Update
Solyc02g087960 No alias R2R3MYB transcription factor 94 0.02 Orthogroups_2024-Update
Solyc03g005570 No alias MYB family protein (AHRD V3.3 *** A0A067KW19_JATCU) 0.02 Orthogroups_2024-Update
Solyc04g074170 No alias MYB-related transcription factor (AHRD V3.3 *** A0A059PRU0_SALMI) 0.03 Orthogroups_2024-Update
Solyc07g006750 No alias blind-like8 0.02 Orthogroups_2024-Update
Solyc11g072060 No alias MYB-related transcription factor (AHRD V3.3 *** A0A059PSR6_SALMI) 0.03 Orthogroups_2024-Update
Sopen01g001670 No alias Myb-like DNA-binding domain 0.05 Orthogroups_2024-Update
Sopen05g004950 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen08g027720 No alias Myb-like DNA-binding domain 0.05 Orthogroups_2024-Update
Sopen10g025190 No alias Myb-like DNA-binding domain 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 67 111
IPR001005 SANT/Myb 14 61
No external refs found!