PSME_00053293-RA

Description : (at1g46264 : 155.0) Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions.; heat shock transcription factor B4 (HSFB4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: asymmetric cell division; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 4 (TAIR:AT4G36990.1); Has 2061 Blast hits to 2048 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 468; Plants - 781; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description)

Gene families : OG_42_0000092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00053293-RA
Cluster	HCCA clusters: Cluster_70

Target	Alias	Description	ECC score	Gene Family Method
A4A49_05282	No alias	heat stress transcription factor a-8	0.03	Orthogroups_2024-Update
A4A49_40866	No alias	heat stress transcription factor b-2b	0.02	Orthogroups_2024-Update
Brara.C03890.1	No alias	HSF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.C03963.1	No alias	HSF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.C04390.1	No alias	HSF-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G165272	No alias	heat shock transcription factor B2A	0.02	Orthogroups_2024-Update
GRMZM2G301485	No alias	heat shock transcription factor B2A	0.02	Orthogroups_2024-Update
Glyma.01G217400	No alias	winged-helix DNA-binding transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.03G157300	No alias	heat shock transcription factor A6B	0.02	Orthogroups_2024-Update
Glyma.04G052000	No alias	heat shock transcription factor A2	0.03	Orthogroups_2024-Update
Glyma.07G235600	No alias	heat shock transcription factor B4	0.05	Orthogroups_2024-Update
Glyma.10G029600	No alias	heat shock transcription factor A6B	0.02	Orthogroups_2024-Update
Glyma.11G025700	No alias	winged-helix DNA-binding transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.15G086400	No alias	heat shock transcription factor A4A	0.02	Orthogroups_2024-Update
LOC_Os02g13800	No alias	HSF-type DNA-binding domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g43334	No alias	HSF-type DNA-binding domain containing protein, expressed	0.03	Orthogroups_2024-Update
MA_110587g0010	No alias	(at1g46264 : 202.0) Encodes SCHIZORIZA, a member of Heat...	0.04	Orthogroups_2024-Update
MA_124940g0010	No alias	(at4g36990 : 91.7) encodes a protein whose sequence is...	0.03	Orthogroups_2024-Update
MA_5374g0010	No alias	(at1g46264 : 191.0) Encodes SCHIZORIZA, a member of Heat...	0.03	Orthogroups_2024-Update
MA_8992661g0010	No alias	(at1g46264 : 182.0) Encodes SCHIZORIZA, a member of Heat...	0.03	Orthogroups_2024-Update
Potri.008G157600	No alias	heat shock transcription factor A6B	0.03	Orthogroups_2024-Update
Potri.011G071700	No alias	heat shock transcription factor A4A	0.03	Orthogroups_2024-Update
Potri.014G027100	No alias	heat shock transcription factor B4	0.02	Orthogroups_2024-Update
Pp1s207_20V6	No alias	heat shock transcription factor	0.03	Orthogroups_2024-Update
Seita.2G229700.1	No alias	HSF-type transcription factor	0.03	Orthogroups_2024-Update
Sopen02g020980	No alias	HSF-type DNA-binding	0.03	Orthogroups_2024-Update
Sopen03g027860	No alias	hypothetical protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	InterProScan predictions
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0009308	amine metabolic process	IEP	Predicted GO
BP	GO:0009690	cytokinin metabolic process	IEP	Predicted GO
BP	GO:0010817	regulation of hormone levels	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Predicted GO
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	Predicted GO
BP	GO:0034754	cellular hormone metabolic process	IEP	Predicted GO
BP	GO:0042445	hormone metabolic process	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	33	122

External Links

No external refs found!

PSME_00053293-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation