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  5. Sopen06g016840

Sopen06g016840


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen06g016840
Cluster HCCA clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
Kfl00569_0100 kfl00569_0100_v1.1 (p31843|rrpo_oenbe : 135.0) RNA-directed DNA polymerase... 0.02 Orthogroups_2024-Update
Kfl00590_0100 kfl00590_0100_v1.1 no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
LOC_Os02g31970 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g06110 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g10460 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g17470 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Pp1s5_46V6 No alias No description available 0.01 Orthogroups_2024-Update
Solyc08g043150 No alias No description available 0.03 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g055290 No alias No description available 0.02 Orthogroups_2024-Update
Sopen00g005290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g012310 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen05g016830 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g006330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g023250 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update
Sopen12g010870 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen12g011680 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g025510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 666 824
IPR023780 Chromo_domain 1472 1526
IPR005162 Retrotrans_gag_dom 219 312
IPR001584 Integrase_cat-core 1168 1274
No external refs found!