PSME_00053408-RA

Description : (at5g39660 : 183.0) Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.; cycling DOF factor 2 (CDF2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: cycling DOF factor 3 (TAIR:AT3G47500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o24463|pbf_maize : 94.4) Dof zinc finger protein PBF (Prolamin box-binding factor) - Zea mays (Maize) & (reliability: 366.0) & (original description: no original description)

Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00053408-RA
Cluster	HCCA clusters: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
A4A49_30381	No alias	dof zinc finger protein pbf	0.03	Orthogroups_2024-Update
A4A49_34579	No alias	dof zinc finger protein pbf	0.03	Orthogroups_2024-Update
Bradi1g26570	No alias	TARGET OF MONOPTEROS 6	0.03	Orthogroups_2024-Update
Bradi4g04260	No alias	OBF-binding protein 3	0.02	Orthogroups_2024-Update
Brara.F01530.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
GRMZM2G042218	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Glyma.01G049400	No alias	cycling DOF factor 3	0.06	Orthogroups_2024-Update
Glyma.05G025900	No alias	cycling DOF factor 3	0.03	Orthogroups_2024-Update
Glyma.12G072400	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Glyma.13G335200	No alias	OBF-binding protein 3	0.06	Orthogroups_2024-Update
Glyma.15G215500	No alias	cycling DOF factor 1	0.03	Orthogroups_2024-Update
Glyma.19G023200	No alias	cycling DOF factor 2	0.03	Orthogroups_2024-Update
Glyma.19G118000	No alias	cycling DOF factor 3	0.04	Orthogroups_2024-Update
HORVU1Hr1G005390.2	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
HORVU4Hr1G013890.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
LOC_Os03g07360	No alias	expressed protein	0.03	Orthogroups_2024-Update
LOC_Os07g48570	No alias	expressed protein	0.03	Orthogroups_2024-Update
LOC_Os10g26620	No alias	dof zinc finger domain containing protein, putative, expressed	0.02	Orthogroups_2024-Update
Potri.002G129600	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Potri.005G149100	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Pp1s199_87V6	No alias	cycling dof factor 2	0.02	Orthogroups_2024-Update
Seita.2G326900.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
Seita.9G259300.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
Sobic.003G121400.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Solyc02g078620	No alias	Dof zinc finger protein (AHRD V3.3 *** W9RD26_9ROSA)	0.02	Orthogroups_2024-Update
Solyc02g088070	No alias	Dof zinc finger protein (AHRD V3.3 *** W9QEV1_9ROSA)	0.03	Orthogroups_2024-Update
Solyc02g090220	No alias	Zinc finger, Dof-type (AHRD V3.3 *** A0A124SC40_CYNCS)	0.02	Orthogroups_2024-Update
Solyc03g121400	No alias	Dof zinc finger protein14	0.03	Orthogroups_2024-Update
Solyc06g062520	No alias	Dof zinc finger protein (AHRD V3.3 *** W9QMS6_9ROSA)	0.02	Orthogroups_2024-Update
Sopen02g032780	No alias	Dof domain, zinc finger	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	IEP	Predicted GO
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Predicted GO
MF	GO:0008378	galactosyltransferase activity	IEP	Predicted GO
BP	GO:0009415	response to water	IEP	Predicted GO
BP	GO:0009628	response to abiotic stimulus	IEP	Predicted GO
BP	GO:0010035	response to inorganic substance	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
BP	GO:1901700	response to oxygen-containing compound	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	102	158

External Links

No external refs found!

PSME_00053408-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation