PSME_00053433-RA

Description : (q40191|rb11a_lotja : 358.0) Ras-related protein Rab11A - Lotus japonicus & (at3g12160 : 357.0) Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity.; RAB GTPase homolog A4D (RABA4D); FUNCTIONS IN: GTP binding; INVOLVED IN: regulation of pollen tube growth, pollen tube growth, pollen tube development; LOCATED IN: exocytic vesicle, apical part of cell; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4C (TAIR:AT5G47960.1); Has 28921 Blast hits to 28882 proteins in 778 species: Archae - 24; Bacteria - 155; Metazoa - 15072; Fungi - 4263; Plants - 3370; Viruses - 20; Other Eukaryotes - 6017 (source: NCBI BLink). & (reliability: 714.0) & (original description: no original description)

Gene families : OG_42_0000131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00053433-RA
Cluster	HCCA clusters: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
A4A49_30348	No alias	ras-related protein rab11d	0.03	Orthogroups_2024-Update
At1g16920	No alias	RABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]	0.03	Orthogroups_2024-Update
At4g18800	No alias	RABA1d [Source:UniProtKB/TrEMBL;Acc:A0A178V3A0]	0.02	Orthogroups_2024-Update
At5g45750	No alias	RABA1c [Source:UniProtKB/TrEMBL;Acc:A0A178UDB2]	0.02	Orthogroups_2024-Update
Bradi2g16480	No alias	RAB GTPase homolog A1F	0.03	Orthogroups_2024-Update
GRMZM2G020544	No alias	RAB GTPase 11C	0.02	Orthogroups_2024-Update
GRMZM2G020661	No alias	RAB GTPase homolog A1F	0.02	Orthogroups_2024-Update
Glyma.14G064800	No alias	RAB GTPase homolog A2B	0.03	Orthogroups_2024-Update
HORVU3Hr1G061000.5	No alias	A-class RAB GTPase	0.02	Orthogroups_2024-Update
HORVU5Hr1G056470.1	No alias	A-class RAB GTPase	0.04	Orthogroups_2024-Update
HORVU5Hr1G120210.4	No alias	A-class RAB GTPase	0.02	Orthogroups_2024-Update
LOC_Os03g62600	No alias	ras-related protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g20050	No alias	ras-related protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g44070	No alias	ras-related protein, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os09g10940	No alias	ras-related protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g23100	No alias	ras-related protein, putative, expressed	0.04	Orthogroups_2024-Update
Potri.002G175700	No alias	RAB GTPase homolog A3	0.03	Orthogroups_2024-Update
Potri.006G057700	No alias	RAB GTPase homolog A4D	0.04	Orthogroups_2024-Update
Pp1s196_73V6	No alias	ras-related protein rab11d	0.02	Orthogroups_2024-Update
Solyc04g012180	No alias	Ras-related protein Rab11D (AHRD V3.3 *** RB11D_TOBAC)	0.03	Orthogroups_2024-Update
Solyc06g005810	No alias	Ras-related protein Rab11C (AHRD V3.3 *** RB11C_LOTJA)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	Predicted GO
MF	GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	IEP	Predicted GO
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	Predicted GO
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0006099	tricarboxylic acid cycle	IEP	Predicted GO
BP	GO:0006101	citrate metabolic process	IEP	Predicted GO
MF	GO:0008131	primary amine oxidase activity	IEP	Predicted GO
BP	GO:0008150	biological_process	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0009916	alternative oxidase activity	IEP	Predicted GO
MF	GO:0015035	protein disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predicted GO
BP	GO:0015936	coenzyme A metabolic process	IEP	Predicted GO
BP	GO:0015977	carbon fixation	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Predicted GO
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Predicted GO
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Predicted GO
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Predicted GO
BP	GO:0016999	antibiotic metabolic process	IEP	Predicted GO
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0048038	quinone binding	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	100	260

External Links

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PSME_00053433-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation