1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00053503-RA

PSME_00053503-RA


Description : (at1g02065 : 156.0) Encodes an SBP-box gene, a member of the SPL gene family. Mutants are affected in micro- and megasporogenesis, trichome formation on sepals, and stamen filament elongation.; squamosa promoter binding protein-like 8 (SPL8); CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 2 (TAIR:AT5G43270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (o04003|lg1_maize : 139.0) LIGULELESS1 protein - Zea mays (Maize) & (reliability: 312.0) & (original description: no original description)


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00053503-RA
Cluster HCCA clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
Bradi1g26720 No alias squamosa promoter binding protein-like 4 0.03 Orthogroups_2024-Update
Bradi2g59110 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Orthogroups_2024-Update
Brara.H02059.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM5G878561 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Orthogroups_2024-Update
Glyma.02G121300 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.03G117500 No alias squamosa promoter binding protein-like 8 0.02 Orthogroups_2024-Update
Glyma.03G117600 No alias squamosa promoter binding protein-like 9 0.04 Orthogroups_2024-Update
Glyma.17G080700 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.18G005600 No alias squamosa promoter binding protein-like 2 0.03 Orthogroups_2024-Update
LOC_Os02g07780 No alias OsSPL4 - SBP-box gene family member, expressed 0.02 Orthogroups_2024-Update
MA_3179g0020 No alias (at1g02065 : 176.0) Encodes an SBP-box gene, a member of... 0.03 Orthogroups_2024-Update
PSME_00041406-RA No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update
PSME_00047223-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
Pp1s50_125V6 No alias squamosa promoter-binding-like protein 11 0.03 Orthogroups_2024-Update
Seita.3G022100.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Seita.5G432500.1 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Solyc05g012040 No alias Squamosa promoter binding protein 6b 0.02 Orthogroups_2024-Update
Solyc07g053810 No alias Squamosa promoter binding protein 4 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 151 224
No external refs found!