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  5. PSME_00053828-RA

PSME_00053828-RA


Description : (original description: no original description)


Gene families : OG_42_0000689 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000689_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00053828-RA
Cluster HCCA clusters: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
438299 No alias winged-helix DNA-binding transcription factor family protein 0.02 Orthogroups_2024-Update
Bradi1g55260 No alias winged-helix DNA-binding transcription factor family protein 0.04 Orthogroups_2024-Update
GRMZM2G080274 No alias histone H1-3 0.04 Orthogroups_2024-Update
GRMZM2G121221 No alias winged-helix DNA-binding transcription factor family protein 0.05 Orthogroups_2024-Update
GRMZM2G401308 No alias winged-helix DNA-binding transcription factor family protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G094400.5 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G106550.2 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G106610.2 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
HORVU5Hr1G106730.2 No alias linker histone *(H1) 0.03 Orthogroups_2024-Update
MA_10436125g0020 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_500183g0010 No alias (original description: no original description) 0.02 Orthogroups_2024-Update
MA_5243726g0010 No alias (p27806|h1_wheat : 91.3) Histone H1 - Triticum aestivum... 0.03 Orthogroups_2024-Update
MA_6409g0010 No alias (original description: no original description) 0.02 Orthogroups_2024-Update
Mp6g03150.1 No alias linker histone (H1) 0.03 Orthogroups_2024-Update
PSME_00002381-RA No alias (p23444|h1_maize : 102.0) Histone H1 - Zea mays (Maize)... 0.04 Orthogroups_2024-Update
Solyc06g084020 No alias histone H1 0.02 Orthogroups_2024-Update
Solyc09g083380 No alias Histone H1 (AHRD V3.3 *-* H1_MAIZE) 0.03 Orthogroups_2024-Update
Sopen09g032300 No alias linker histone H1 and H5 family 0.03 Orthogroups_2024-Update
evm.model.contig_2062.24 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
evm.model.tig00020780.71 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006334 nucleosome assembly IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 57 125
No external refs found!