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  5. PSME_00053984-RA

PSME_00053984-RA


Description : (q41046|phy_pinsy : 1382.0) Phytochrome - Pinus sylvestris (Scots pine) & (at2g18790 : 1118.0) Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response.; phytochrome B (PHYB); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome D (TAIR:AT4G16250.1); Has 25059 Blast hits to 24774 proteins in 3701 species: Archae - 266; Bacteria - 19279; Metazoa - 9; Fungi - 493; Plants - 3930; Viruses - 5; Other Eukaryotes - 1077 (source: NCBI BLink). & (reliability: 2236.0) & (original description: no original description)


Gene families : OG_42_0001032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001032_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00053984-RA
Cluster HCCA clusters: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
HORVU4Hr1G053400.1 No alias temperature sensor protein *(PHY-B) & phytochrome... 0.03 Orthogroups_2024-Update
Pp1s233_24V6 No alias phy1 gene for phytochrome protein PHY1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
BP GO:0009584 detection of visible light IEA InterProScan predictions
BP GO:0018298 protein-chromophore linkage IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008987 quinolinate synthetase A activity IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003018 GAF 227 406
IPR013767 PAS_fold 623 737
IPR013767 PAS_fold 753 872
IPR013654 PAS_2 76 193
IPR013515 Phytochrome_cen-reg 419 591
No external refs found!