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  5. PSME_00054022-RA

PSME_00054022-RA


Description : (at1g68930 : 531.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 47331 Blast hits to 14466 proteins in 272 species: Archae - 2; Bacteria - 18; Metazoa - 110; Fungi - 135; Plants - 46381; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink). & (q76c99|rf1_orysa : 91.7) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1062.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00054022-RA
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
119022 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
97289 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.08G034600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G026000 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G028520.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g46980 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_10430355g0010 No alias (at1g11290 : 469.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_16917g0010 No alias (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_183738g0010 No alias (at3g12770 : 617.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_185098g0010 No alias (at3g49170 : 649.0) embryo defective 2261 (EMB2261);... 0.05 Orthogroups_2024-Update
MA_25729g0010 No alias (at2g22070 : 551.0) pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update
MA_2991g0010 No alias (at2g27610 : 718.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_3317g0020 No alias (at4g13650 : 607.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_36655g0010 No alias (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_43615g0010 No alias (at1g11290 : 687.0) Pentatricopeptide Repeat Protein... 0.06 Orthogroups_2024-Update
MA_470679g0010 No alias (at3g24000 : 433.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_658463g0010 No alias (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_89214g0010 No alias (at1g11290 : 690.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_9354530g0010 No alias (at1g11290 : 613.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00006511-RA No alias (at1g11290 : 568.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00018763-RA No alias (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00031504-RA No alias (at3g23330 : 207.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00054674-RA No alias (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Sobic.003G433600.1 No alias RNA editing factor *(OTP72) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 366 413
IPR002885 Pentatricopeptide_repeat 265 312
IPR002885 Pentatricopeptide_repeat 177 210
IPR032867 DYW_dom 540 663
IPR002885 Pentatricopeptide_repeat 93 121
IPR002885 Pentatricopeptide_repeat 441 465
IPR002885 Pentatricopeptide_repeat 122 151
No external refs found!