Sopen06g017260

Description : Region in Clathrin and VPS

Gene families : OG_42_0001928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen06g017260
Cluster	HCCA clusters: Cluster_259

Target	Alias	Description	ECC score	Gene Family Method
At3g11130	No alias	Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]	0.03	Orthogroups_2024-Update
Bradi4g44977	No alias	Clathrin, heavy chain	0.03	Orthogroups_2024-Update
Solyc05g052510	No alias	Clathrin heavy chain (AHRD V3.3 *** K4C1T2_SOLLC)	0.02	Orthogroups_2024-Update
Solyc06g051310	No alias	Clathrin heavy chain (AHRD V3.3 *** K4C5S4_SOLLC)	0.03	Orthogroups_2024-Update
evm.model.contig_3467.5	No alias	(at3g11130 : 1389.0) Clathrin, heavy chain; FUNCTIONS...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	InterProScan predictions
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	InterProScan predictions
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	InterProScan predictions
CC	GO:0030132	clathrin coat of coated pit	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044431	Golgi apparatus part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044459	plasma membrane part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000547	Clathrin_H-chain/VPS_repeat	850	976
IPR000547	Clathrin_H-chain/VPS_repeat	557	688
IPR000547	Clathrin_H-chain/VPS_repeat	1146	1281
IPR000547	Clathrin_H-chain/VPS_repeat	1440	1579
IPR000547	Clathrin_H-chain/VPS_repeat	993	1132
IPR000547	Clathrin_H-chain/VPS_repeat	701	840
IPR000547	Clathrin_H-chain/VPS_repeat	1289	1431
IPR022365	Clathrin_H-chain_propeller_rpt	154	197
IPR022365	Clathrin_H-chain_propeller_rpt	22	56
IPR015348	Clathrin_H-chain_linker_core	344	367

External Links

No external refs found!

Sopen06g017260

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation