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  5. PSME_00054256-RA

PSME_00054256-RA


Description : (p30079|chsy_pinsy : 775.0) Chalcone synthase (EC 2.3.1.74) (Naringenin-chalcone synthase) - Pinus sylvestris (Scots pine) & (at5g13930 : 639.0) Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.; TRANSPARENT TESTA 4 (TT4); FUNCTIONS IN: naringenin-chalcone synthase activity; INVOLVED IN: in 11 processes; LOCATED IN: plant-type vacuole membrane, endoplasmic reticulum, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Chalcone/stilbene synthase, active site (InterPro:IPR018088), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT4G34850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1278.0) & (original description: no original description)


Gene families : OG_42_0000385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000385_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00054256-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
A4A49_65921 No alias chalcone synthase 1b 0.03 Orthogroups_2024-Update
Glyma.08G109300 No alias Chalcone and stilbene synthase family protein 0.03 Orthogroups_2024-Update
Glyma.08G110300 No alias Chalcone and stilbene synthase family protein 0.03 Orthogroups_2024-Update
Glyma.08G110460 No alias Chalcone and stilbene synthase family protein 0.03 Orthogroups_2024-Update
Glyma.08G110801 No alias Chalcone and stilbene synthase family protein 0.03 Orthogroups_2024-Update
LOC_Os10g08670 No alias chalcone synthase, putative, expressed 0.03 Orthogroups_2024-Update
MA_10426264g0020 No alias (p30079|chsy_pinsy : 776.0) Chalcone synthase (EC... 0.04 Orthogroups_2024-Update
MA_20764g0010 No alias (p30079|chsy_pinsy : 760.0) Chalcone synthase (EC... 0.05 Orthogroups_2024-Update
MA_5735g0010 No alias (p30079|chsy_pinsy : 653.0) Chalcone synthase (EC... 0.04 Orthogroups_2024-Update
Mp4g14100.1 No alias chalcone synthase 0.02 Orthogroups_2024-Update
Mp4g14190.1 No alias chalcone synthase 0.02 Orthogroups_2024-Update
Mp4g14200.1 No alias chalcone synthase 0.02 Orthogroups_2024-Update
Mp4g18370.1 No alias chalcone synthase 0.03 Orthogroups_2024-Update
PSME_00042106-RA No alias (p30079|chsy_pinsy : 774.0) Chalcone synthase (EC... 0.05 Orthogroups_2024-Update
Pp1s228_25V6 No alias chalcone synthase 0.02 Orthogroups_2024-Update
Pp1s22_4V6 No alias chalcone synthase 0.03 Orthogroups_2024-Update
Seita.8G139300.1 No alias EC_2.3 acyltransferase 0.03 Orthogroups_2024-Update
Sobic.005G137100.1 No alias chalcone synthase & EC_2.3 acyltransferase 0.03 Orthogroups_2024-Update
Sobic.005G137300.1 No alias chalcone synthase & EC_2.3 acyltransferase 0.02 Orthogroups_2024-Update
Sobic.007G058900.1 No alias chalcone synthase & EC_2.3 acyltransferase 0.03 Orthogroups_2024-Update
Solyc09g091510 No alias chalcone synthase 1 0.03 Orthogroups_2024-Update
Solyc12g098090 No alias Chalcone synthase (AHRD V3.3 *** CHSY_CATRO) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012328 Chalcone/stilbene_synth_C 243 393
IPR001099 Chalcone/stilbene_synthase_N 11 233
No external refs found!