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  5. PSME_00054300-RA

PSME_00054300-RA


Description : (at4g20140 : 389.0) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.; GASSHO1 (GSO1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, embryo development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT5G44700.1); Has 301150 Blast hits to 144127 proteins in 5007 species: Archae - 193; Bacteria - 28594; Metazoa - 96322; Fungi - 11667; Plants - 129816; Viruses - 411; Other Eukaryotes - 34147 (source: NCBI BLink). & (p93194|rpk1_iponi : 308.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 778.0) & (original description: no original description)


Gene families : OG_42_0000007 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00054300-RA
Cluster HCCA clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
101476 No alias Leucine-rich repeat family protein 0.03 Orthogroups_2024-Update
120629 No alias Leucine-rich receptor-like protein kinase family protein 0.03 Orthogroups_2024-Update
A4A49_26079 No alias putative lrr receptor-like serinethreonine-protein kinase 0.03 Orthogroups_2024-Update
Brara.E02261.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.03 Orthogroups_2024-Update
HORVU1Hr1G086400.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.03 Orthogroups_2024-Update
HORVU5Hr1G122510.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.02 Orthogroups_2024-Update
MA_10427926g0010 No alias (at3g47110 : 285.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
MA_10435743g0020 No alias (at1g35710 : 155.0) Protein kinase family protein with... 0.03 Orthogroups_2024-Update
MA_11052g0010 No alias (at2g24130 : 556.0) Leucine-rich receptor-like protein... 0.04 Orthogroups_2024-Update
MA_125058g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_189242g0010 No alias (at1g25320 : 81.6) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
MA_546916g0010 No alias (at1g63430 : 93.6) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
MA_74823g0010 No alias (at5g46330 : 221.0) Encodes a leucine-rich repeat... 0.04 Orthogroups_2024-Update
MA_805205g0020 No alias (at2g24130 : 159.0) Leucine-rich receptor-like protein... 0.06 Orthogroups_2024-Update
MA_8708888g0010 No alias (at1g25320 : 155.0) Leucine-rich repeat protein kinase... 0.03 Orthogroups_2024-Update
MA_948744g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00027031-RA No alias (at3g47570 : 470.0) Leucine-rich repeat protein kinase... 0.06 Orthogroups_2024-Update
PSME_00039997-RA No alias (at2g24130 : 449.0) Leucine-rich receptor-like protein... 0.06 Orthogroups_2024-Update
PSME_00040826-RA No alias (at5g63930 : 192.0) Leucine-rich repeat protein kinase... 0.06 Orthogroups_2024-Update
PSME_00041027-RA No alias (at3g24240 : 280.0) Leucine-rich repeat receptor-like... 0.05 Orthogroups_2024-Update
PSME_00042483-RA No alias (at3g47570 : 568.0) Leucine-rich repeat protein kinase... 0.06 Orthogroups_2024-Update
PSME_00043563-RA No alias (at5g46330 : 292.0) Encodes a leucine-rich repeat... 0.04 Orthogroups_2024-Update
PSME_00046894-RA No alias (at5g46330 : 162.0) Encodes a leucine-rich repeat... 0.04 Orthogroups_2024-Update
PSME_00047382-RA No alias (at2g24130 : 593.0) Leucine-rich receptor-like protein... 0.04 Orthogroups_2024-Update
PSME_00056030-RA No alias (at2g26330 : 241.0) Homologous to receptor protein... 0.05 Orthogroups_2024-Update
Seita.1G228200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.1G246000.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.02 Orthogroups_2024-Update
Seita.2G093900.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.04 Orthogroups_2024-Update
Seita.5G105200.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.03 Orthogroups_2024-Update
Seita.5G106900.1 No alias EC_2.7 transferase transferring phosphorus-containing group 0.07 Orthogroups_2024-Update
Seita.8G160700.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.02 Orthogroups_2024-Update
Sobic.004G091500.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.02 Orthogroups_2024-Update
Sobic.005G205300.1 No alias LRR-XII protein kinase & EC_2.7 transferase transferring... 0.03 Orthogroups_2024-Update
Sopen07g002870 No alias Leucine Rich repeats (2 copies) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 869 888
IPR001611 Leu-rich_rpt 890 911
IPR001611 Leu-rich_rpt 759 779
IPR001611 Leu-rich_rpt 354 376
IPR013210 LRR_N_plant-typ 69 108
IPR025875 Leu-rich_rpt_4 784 818
IPR001611 Leu-rich_rpt 283 341
IPR001611 Leu-rich_rpt 545 603
IPR001611 Leu-rich_rpt 382 437
IPR001611 Leu-rich_rpt 617 676
IPR001611 Leu-rich_rpt 450 509
No external refs found!