Description : (at3g24000 : 542.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G23330.1); Has 43197 Blast hits to 14383 proteins in 288 species: Archae - 1; Bacteria - 6; Metazoa - 112; Fungi - 144; Plants - 42273; Viruses - 0; Other Eukaryotes - 661 (source: NCBI BLink). & (q76c99|rf1_orysa : 105.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 984.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00054324-RA | |
Cluster | HCCA clusters: Cluster_108 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
105197 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
At2g41080 | No alias | Pentatricopeptide repeat-containing protein At2g41080... | 0.05 | Orthogroups_2024-Update | |
Bradi1g03670 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi2g53450 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi5g14000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.E00324.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.G01460.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
GRMZM2G076257 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Orthogroups_2024-Update | |
Glyma.18G134700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.19G026400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
HORVU3Hr1G073540.14 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G079090.7 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU6Hr1G027560.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
LOC_Os06g02200 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_41676g0020 | No alias | (at3g24000 : 462.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_81436g0010 | No alias | (at4g21300 : 593.0) Tetratricopeptide repeat (TPR)-like... | 0.05 | Orthogroups_2024-Update | |
PSME_00003038-RA | No alias | (at1g11290 : 364.0) Pentatricopeptide Repeat Protein... | 0.05 | Orthogroups_2024-Update | |
Pp1s276_42V6 | No alias | F4I10.100; pentatricopeptide (PPR) repeat-containing... | 0.03 | Orthogroups_2024-Update | |
Sobic.010G197400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Sopen02g038750 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
BP | GO:0007275 | multicellular organism development | IEP | Predicted GO |
BP | GO:0009719 | response to endogenous stimulus | IEP | Predicted GO |
BP | GO:0009725 | response to hormone | IEP | Predicted GO |
BP | GO:0010033 | response to organic substance | IEP | Predicted GO |
BP | GO:0032501 | multicellular organismal process | IEP | Predicted GO |
BP | GO:0032502 | developmental process | IEP | Predicted GO |
BP | GO:0042221 | response to chemical | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0048856 | anatomical structure development | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 477 | 600 |
IPR002885 | Pentatricopeptide_repeat | 176 | 201 |
IPR002885 | Pentatricopeptide_repeat | 377 | 401 |
IPR002885 | Pentatricopeptide_repeat | 73 | 97 |
IPR002885 | Pentatricopeptide_repeat | 443 | 471 |
IPR002885 | Pentatricopeptide_repeat | 202 | 249 |
IPR002885 | Pentatricopeptide_repeat | 100 | 148 |
IPR002885 | Pentatricopeptide_repeat | 302 | 350 |
No external refs found! |