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  5. PSME_00054407-RA

PSME_00054407-RA


Description : (at1g12280 : 239.0) LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 17827 Blast hits to 16139 proteins in 646 species: Archae - 26; Bacteria - 895; Metazoa - 2143; Fungi - 215; Plants - 14237; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink). & (reliability: 440.0) & (original description: no original description)


Gene families : OG_42_0001086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00054407-RA
Cluster HCCA clusters: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
110600 No alias LRR and NB-ARC domains-containing disease resistance protein 0.07 Orthogroups_2024-Update
MA_10436956g0010 No alias (at1g12220 : 94.0) Resistance gene, mediates resistance... 0.04 Orthogroups_2024-Update
MA_52192g0010 No alias (at4g27220 : 135.0) NB-ARC domain-containing disease... 0.04 Orthogroups_2024-Update
Mp3g09180.1 No alias Probable disease resistance protein At4g27220... 0.03 Orthogroups_2024-Update
PSME_00005066-RA No alias (at4g27220 : 191.0) NB-ARC domain-containing disease... 0.05 Orthogroups_2024-Update
PSME_00006361-RA No alias (at1g12280 : 208.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
PSME_00054518-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003856 3-dehydroquinate synthase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004560 alpha-L-fucosidase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
MF GO:0015928 fucosidase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002182 NB-ARC 205 434
No external refs found!