1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00054473-RA

PSME_00054473-RA


Description : (at5g64750 : 103.0) Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response.; ABA REPRESSOR1 (ABR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q6k7e6|erf1_orysa : 89.7) Ethylene-responsive transcription factor 1 (Ethylene-responsive element-binding factor 1) (EREBP-1) (OsEREBP1) - Oryza sativa (Rice) & (reliability: 191.0) & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00054473-RA
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
68470 No alias ethylene responsive element binding factor 1 0.03 Orthogroups_2024-Update
80895 No alias ethylene responsive element binding factor 2 0.04 Orthogroups_2024-Update
A4A49_03112 No alias ethylene-responsive transcription factor crf4 0.02 Orthogroups_2024-Update
A4A49_07545 No alias pathogenesis-related genes transcriptional activator pti6 0.03 Orthogroups_2024-Update
A4A49_16244 No alias ethylene-responsive transcription factor rap2-11 0.04 Orthogroups_2024-Update
A4A49_16579 No alias ethylene-responsive transcription factor abr1 0.03 Orthogroups_2024-Update
A4A49_20472 No alias ethylene-responsive transcription factor 13 0.02 Orthogroups_2024-Update
A4A49_27754 No alias ethylene-responsive transcription factor 1a 0.03 Orthogroups_2024-Update
A4A49_30738 No alias ethylene-responsive transcription factor abr1 0.02 Orthogroups_2024-Update
A4A49_36962 No alias ethylene-responsive transcription factor erf003 0.03 Orthogroups_2024-Update
A4A49_42272 No alias ethylene-responsive transcription factor 4 0.05 Orthogroups_2024-Update
At1g28370 No alias ERF domain protein 11 [Source:TAIR;Acc:AT1G28370] 0.03 Orthogroups_2024-Update
At1g43160 No alias Ethylene-responsive transcription factor RAP2-6... 0.04 Orthogroups_2024-Update
At2g25820 No alias Ethylene-responsive transcription factor ERF042... 0.03 Orthogroups_2024-Update
At2g35700 No alias ERF38 [Source:UniProtKB/TrEMBL;Acc:A0A178VWJ3] 0.03 Orthogroups_2024-Update
At2g47520 No alias Ethylene-responsive transcription factor ERF071... 0.04 Orthogroups_2024-Update
At3g15210 No alias Ethylene-responsive transcription factor 4... 0.03 Orthogroups_2024-Update
At4g25490 No alias DRE/CRT-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:B6DTR3] 0.03 Orthogroups_2024-Update
At5g25190 No alias Ethylene-responsive transcription factor ERF003... 0.03 Orthogroups_2024-Update
Bradi1g54450 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Bradi1g75040 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g52370 No alias erf domain protein 9 0.02 Orthogroups_2024-Update
Bradi4g29010 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Brara.C01524.1 No alias transcription factor *(CBF/DREB1) & subgroup ERF-III... 0.03 Orthogroups_2024-Update
Brara.C03562.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Brara.C03619.1 No alias subgroup ERF-VII transcription factor & transcription... 0.03 Orthogroups_2024-Update
Brara.D01886.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Brara.E01243.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Brara.G02121.1 No alias subgroup ERF-I transcription factor 0.04 Orthogroups_2024-Update
Brara.G02403.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I00528.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Brara.I00546.1 No alias cutin and suberin biosynthesis transcription factor... 0.03 Orthogroups_2024-Update
Brara.I01789.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Brara.I04678.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Brara.J02660.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
Brara.K00042.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G019443 No alias related to AP2 11 0.03 Orthogroups_2024-Update
GRMZM2G053503 No alias Integrase-type DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G055204 No alias related to AP2 4 0.04 Orthogroups_2024-Update
GRMZM5G837876 No alias ethylene-responsive element binding factor 15 0.04 Orthogroups_2024-Update
Glyma.01G231000 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G066200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G017300 No alias related to AP2 11 0.04 Orthogroups_2024-Update
Glyma.03G112700 No alias ethylene-responsive element binding factor 13 0.03 Orthogroups_2024-Update
Glyma.03G112800 No alias ethylene-responsive element binding factor 13 0.03 Orthogroups_2024-Update
Glyma.03G159800 No alias ethylene responsive element binding factor 3 0.03 Orthogroups_2024-Update
Glyma.04G062900 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G186700 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G044300 No alias related to AP2 12 0.03 Orthogroups_2024-Update
Glyma.07G114000 No alias ethylene-responsive element binding factor 13 0.03 Orthogroups_2024-Update
Glyma.07G244867 No alias ethylene-responsive element binding protein 0.02 Orthogroups_2024-Update
Glyma.07G250100 No alias Integrase-type DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
Glyma.08G216600 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G242600 No alias ethylene-responsive element binding factor 13 0.03 Orthogroups_2024-Update
Glyma.10G036700 No alias ethylene response factor 1 0.03 Orthogroups_2024-Update
Glyma.10G099800 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G239200 No alias related to AP2 4 0.04 Orthogroups_2024-Update
Glyma.14G056200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G057900 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G146100 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G004200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G040000 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G046300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G018200 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G252400 No alias ethylene-responsive element binding factor 13 0.05 Orthogroups_2024-Update
Glyma.19G142000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G163700 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.20G031000 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Glyma.20G070000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G098330.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU4Hr1G071890.2 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G080340.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G060140.1 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
HORVU6Hr1G062380.3 No alias subgroup ERF-IX transcription factor 0.05 Orthogroups_2024-Update
HORVU7Hr1G088790.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
LOC_Os02g43790 No alias ethylene-responsive transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g43970 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g08490 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g43210 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g11460 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g25170 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_1037g0020 No alias (at1g74930 : 134.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_10431529g0030 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_10433094g0010 No alias (at1g74930 : 123.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_115348g0020 No alias (at4g17500 : 116.0) Encodes a member of the ERF... 0.03 Orthogroups_2024-Update
MA_2446g0010 No alias (at2g20880 : 136.0) Integrase-type DNA-binding... 0.03 Orthogroups_2024-Update
MA_33394g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_3405g0010 No alias (q40476|erf1_tobac : 120.0) Ethylene-responsive... 0.03 Orthogroups_2024-Update
MA_426919g0010 No alias (at1g19210 : 109.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
MA_426919g0020 No alias (at1g19210 : 104.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_436575g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_502153g0010 No alias (at5g44210 : 94.4) encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_6305g0010 No alias (at5g21960 : 127.0) encodes a member of the DREB... 0.05 Orthogroups_2024-Update
MA_78784g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_88g0020 No alias (at1g74930 : 118.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
MA_891091g0010 No alias (at4g17500 : 92.0) Encodes a member of the ERF (ethylene... 0.04 Orthogroups_2024-Update
MA_8984558g0010 No alias (at1g74930 : 107.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_922309g0010 No alias (at4g17500 : 92.0) Encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_924346g0010 No alias (at1g77200 : 104.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
MA_9785986g0010 No alias (at5g21960 : 130.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_9786598g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00008897-RA No alias (at4g17500 : 88.2) Encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
PSME_00009547-RA No alias (at4g17500 : 103.0) Encodes a member of the ERF... 0.03 Orthogroups_2024-Update
PSME_00037531-RA No alias (at5g61890 : 123.0) encodes a member of the ERF... 0.03 Orthogroups_2024-Update
PSME_00039617-RA No alias (at4g17500 : 120.0) Encodes a member of the ERF... 0.04 Orthogroups_2024-Update
PSME_00041322-RA No alias (q40476|erf1_tobac : 120.0) Ethylene-responsive... 0.03 Orthogroups_2024-Update
PSME_00048384-RA No alias (at5g11190 : 113.0) encodes a member of the ERF... 0.04 Orthogroups_2024-Update
PSME_00051454-RA No alias (at1g19210 : 98.6) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
PSME_00051455-RA No alias (at5g21960 : 102.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
PSME_00052064-RA No alias (at5g21960 : 132.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
PSME_00056166-RA No alias (at5g11590 : 103.0) encodes a member of the DREB... 0.05 Orthogroups_2024-Update
PSME_00056324-RA No alias (at5g11590 : 111.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
Potri.001G079800 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G039000 No alias ethylene response factor 1 0.03 Orthogroups_2024-Update
Potri.003G161000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G141200 No alias redox responsive transcription factor 1 0.04 Orthogroups_2024-Update
Potri.006G218200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.009G147700 No alias dehydration response element B1A 0.02 Orthogroups_2024-Update
Potri.010G006800 No alias ethylene-responsive element binding protein 0.03 Orthogroups_2024-Update
Potri.010G046600 No alias DORNROSCHEN-like 0.03 Orthogroups_2024-Update
Potri.017G055400 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.019G131300 No alias cytokinin response factor 4 0.02 Orthogroups_2024-Update
Potri.T050600 No alias ethylene response factor 1 0.03 Orthogroups_2024-Update
Pp1s14_196V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s15_189V6 No alias transcriptional factor 0.02 Orthogroups_2024-Update
Pp1s15_234V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s160_12V6 No alias ap2 domain transcription factor 0.04 Orthogroups_2024-Update
Pp1s199_50V6 No alias ap2 erf domain-containing transcription factor 0.03 Orthogroups_2024-Update
Pp1s259_104V6 No alias ap2 erf domain-containing transcription factor 0.03 Orthogroups_2024-Update
Pp1s259_94V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s296_32V6 No alias transcriptional factor 0.03 Orthogroups_2024-Update
Pp1s41_212V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s67_144V6 No alias ap2 domain transcription factor 0.02 Orthogroups_2024-Update
Seita.1G257300.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Seita.1G330800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G031600.1 No alias subgroup ERF-VIII transcription factor 0.02 Orthogroups_2024-Update
Seita.3G145700.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Seita.3G291500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G205100.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Seita.8G098100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G428700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G502300.1 No alias subgroup ERF-IX transcription factor 0.04 Orthogroups_2024-Update
Sobic.002G139400.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Sobic.003G369100.3 No alias subgroup ERF-X transcription factor 0.02 Orthogroups_2024-Update
Sobic.004G283300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G297100.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Sobic.005G051200.2 No alias subgroup ERF-X transcription factor 0.02 Orthogroups_2024-Update
Sobic.006G168000.1 No alias subgroup ERF-IX transcription factor 0.04 Orthogroups_2024-Update
Solyc05g050830 No alias Ethylene-responsive transcription factor4 0.04 Orthogroups_2024-Update
Solyc05g052410 No alias Dehydration responsive element binding protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g054220 No alias Ethylene-responsive transcription factor ERF053 (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g011740 No alias Ethylene-responsive transcription factor (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen02g037700 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen03g024350 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen07g021830 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen08g004160 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen11g007720 No alias AP2 domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 174 223
No external refs found!