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  5. PSME_00054516-RA

PSME_00054516-RA


Description : (at1g24090 : 85.9) RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT5G51080.2); Has 3412 Blast hits to 3412 proteins in 738 species: Archae - 71; Bacteria - 1533; Metazoa - 7; Fungi - 2; Plants - 1270; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink). & (reliability: 160.2) & (original description: no original description)


Gene families : OG_42_0002280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002280_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00054516-RA
Cluster HCCA clusters: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
PSME_00001630-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00008241-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00025008-RA No alias (at1g24090 : 101.0) RNase H family protein; FUNCTIONS... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 123 243
No external refs found!