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  5. PSME_00054550-RA

PSME_00054550-RA


Description : (at5g46700 : 291.0) Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis.; TORNADO 2 (TRN2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: radial pattern formation, meristem structural organization, aging, leaf vascular tissue pattern formation, root morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin2 (TAIR:AT2G19580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 582.0) & (original description: no original description)


Gene families : OG_42_0002145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002145_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00054550-RA
Cluster HCCA clusters: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
A4A49_38687 No alias tetraspanin-2 0.04 Orthogroups_2024-Update
Brara.G00074.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G181354 No alias tetraspanin2 0.02 Orthogroups_2024-Update
HORVU7Hr1G086670.3 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_485622g0010 No alias (at5g46700 : 228.0) Encodes a transmembrane protein of... 0.03 Orthogroups_2024-Update
PSME_00055640-RA No alias (at5g46700 : 324.0) Encodes a transmembrane protein of... 0.04 Orthogroups_2024-Update
Potri.003G093000 No alias Tetraspanin family protein 0.04 Orthogroups_2024-Update
Sopen08g025370 No alias Tetraspanin family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR018499 Tetraspanin/Peripherin 15 258
No external refs found!