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  5. PSME_00054679-RA

PSME_00054679-RA


Description : (at3g12160 : 323.0) Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity.; RAB GTPase homolog A4D (RABA4D); FUNCTIONS IN: GTP binding; INVOLVED IN: regulation of pollen tube growth, pollen tube growth, pollen tube development; LOCATED IN: exocytic vesicle, apical part of cell; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4C (TAIR:AT5G47960.1); Has 28921 Blast hits to 28882 proteins in 778 species: Archae - 24; Bacteria - 155; Metazoa - 15072; Fungi - 4263; Plants - 3370; Viruses - 20; Other Eukaryotes - 6017 (source: NCBI BLink). & (q40522|rb11d_tobac : 313.0) Ras-related protein Rab11D - Nicotiana tabacum (Common tobacco) & (reliability: 646.0) & (original description: no original description)


Gene families : OG_42_0000131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00054679-RA
Cluster HCCA clusters: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
At4g18800 No alias RABA1d [Source:UniProtKB/TrEMBL;Acc:A0A178V3A0] 0.02 Orthogroups_2024-Update
Bradi2g46060 No alias RAB GTPase homolog A1F 0.02 Orthogroups_2024-Update
Bradi3g35100 No alias RAB GTPase homolog A1F 0.02 Orthogroups_2024-Update
HORVU5Hr1G056470.1 No alias A-class RAB GTPase 0.03 Orthogroups_2024-Update
LOC_Os01g62950 No alias ras-related protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g35860 No alias ras-related protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_129080g0010 No alias (q39434|rb2bv_betvu : 338.0) Ras-related protein Rab2BV... 0.04 Orthogroups_2024-Update
Seita.2G282900.1 No alias A-class RAB GTPase 0.03 Orthogroups_2024-Update
Seita.9G016900.1 No alias A-class RAB GTPase 0.03 Orthogroups_2024-Update
Solyc03g064020 No alias Ras-related protein RABA4d (AHRD V3.3 *** RAA4D_ARATH) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
MF GO:0005525 GTP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
InterPro domains Description Start Stop
IPR001806 Small_GTPase 17 177
No external refs found!