1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00054756-RA

PSME_00054756-RA


Description : (at1g19300 : 237.0) The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.; PARVUS (PARVUS); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 2 (TAIR:AT3G50760.1); Has 1825 Blast hits to 1814 proteins in 439 species: Archae - 2; Bacteria - 918; Metazoa - 149; Fungi - 0; Plants - 715; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). & (reliability: 474.0) & (original description: no original description)


Gene families : OG_42_0000386 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000386_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00054756-RA

Target Alias Description ECC score Gene Family Method Actions
Brara.F01362.1 No alias galacturonosyltransferase 0.02 Orthogroups_2024-Update
HORVU2Hr1G024740.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc05g006510 No alias Hexosyltransferase (AHRD V3.3 *** K4BWH7_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016757 transferase activity, transferring glycosyl groups IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002495 Glyco_trans_8 120 242
No external refs found!