PSME_00054803-RA

Description : (at3g52450 : 283.0) Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.; plant U-box 22 (PUB22); CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 23 (TAIR:AT2G35930.1); Has 2414 Blast hits to 2402 proteins in 185 species: Archae - 0; Bacteria - 30; Metazoa - 243; Fungi - 90; Plants - 1816; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink). & (q64ha9|spl11_orysa : 122.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 566.0) & (original description: no original description)

Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00054803-RA
Cluster	HCCA clusters: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
426053	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
At1g66160	No alias	U-box domain-containing protein 20...	0.04	Orthogroups_2024-Update
Bradi5g09720	No alias	plant U-box 22	0.02	Orthogroups_2024-Update
GRMZM2G071484	No alias	plant U-box 22	0.03	Orthogroups_2024-Update
GRMZM2G151204	No alias	CYS, MET, PRO, and GLY protein 1	0.03	Orthogroups_2024-Update
GRMZM5G855994	No alias	ARM repeat superfamily protein	0.02	Orthogroups_2024-Update
Glyma.02G196301	No alias	plant U-box 24	0.04	Orthogroups_2024-Update
Glyma.08G147200	No alias	CYS, MET, PRO, and GLY protein 2	0.03	Orthogroups_2024-Update
Glyma.11G214500	No alias	CYS, MET, PRO, and GLY protein 1	0.04	Orthogroups_2024-Update
Glyma.18G042100	No alias	ARM repeat superfamily protein	0.03	Orthogroups_2024-Update
HORVU6Hr1G077120.1	No alias	E3 ubiquitin ligase	0.02	Orthogroups_2024-Update
HORVU6Hr1G089560.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
LOC_Os01g64570	No alias	U-box domain-containing protein, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os07g37410	No alias	expressed protein	0.02	Orthogroups_2024-Update
LOC_Os10g06670	No alias	U-box protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_200041g0010	No alias	(at3g19380 : 209.0) plant U-box 25 (PUB25); FUNCTIONS...	0.06	Orthogroups_2024-Update
MA_311559g0010	No alias	(at3g52450 : 124.0) Encodes a cytoplasmically localized...	0.03	Orthogroups_2024-Update
MA_33190g0010	No alias	(at2g35930 : 324.0) Encodes a cytoplasmically localized...	0.03	Orthogroups_2024-Update
MA_6335g0010	No alias	"(at5g64660 : 281.0) ""CYS, MET, PRO, and GLY protein...	0.03	Orthogroups_2024-Update
MA_684442g0010	No alias	(at3g52450 : 140.0) Encodes a cytoplasmically localized...	0.04	Orthogroups_2024-Update
PSME_00026834-RA	No alias	(at3g19380 : 258.0) plant U-box 25 (PUB25); FUNCTIONS...	0.05	Orthogroups_2024-Update
PSME_00043995-RA	No alias	(at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS...	0.06	Orthogroups_2024-Update
PSME_00049469-RA	No alias	(at2g35930 : 281.0) Encodes a cytoplasmically localized...	0.04	Orthogroups_2024-Update
PSME_00056761-RA	No alias	(at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS...	0.04	Orthogroups_2024-Update
Potri.002G070500	No alias	plant U-box 29	0.05	Orthogroups_2024-Update
Potri.005G189800	No alias	plant U-box 29	0.05	Orthogroups_2024-Update
Potri.006G202600	No alias	plant U-box 22	0.03	Orthogroups_2024-Update
Potri.006G202700	No alias	plant U-box 24	0.03	Orthogroups_2024-Update
Potri.009G016100	No alias	plant U-box 24	0.04	Orthogroups_2024-Update
Potri.009G100200	No alias	plant U-box 26	0.03	Orthogroups_2024-Update
Potri.016G069400	No alias	plant U-box 22	0.05	Orthogroups_2024-Update
Potri.016G069500	No alias	plant U-box 24	0.03	Orthogroups_2024-Update
Potri.017G135000	No alias	ARM repeat superfamily protein	0.03	Orthogroups_2024-Update
Pp1s109_251V6	No alias	u-box domain-containing protein	0.02	Orthogroups_2024-Update
Seita.4G109000.1	No alias	E3 ubiquitin ligase	0.05	Orthogroups_2024-Update
Seita.7G104100.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.004G169200.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Sobic.004G169900.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.006G075801.1	No alias	Unknown function	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan predictions
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0001871	pattern binding	IEP	Predicted GO
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Predicted GO
MF	GO:0004970	ionotropic glutamate receptor activity	IEP	Predicted GO
MF	GO:0005216	ion channel activity	IEP	Predicted GO
MF	GO:0005230	extracellular ligand-gated ion channel activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
MF	GO:0008066	glutamate receptor activity	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
MF	GO:0015276	ligand-gated ion channel activity	IEP	Predicted GO
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO
MF	GO:0022824	transmitter-gated ion channel activity	IEP	Predicted GO
MF	GO:0022834	ligand-gated channel activity	IEP	Predicted GO
MF	GO:0022835	transmitter-gated channel activity	IEP	Predicted GO
MF	GO:0022836	gated channel activity	IEP	Predicted GO
MF	GO:0022838	substrate-specific channel activity	IEP	Predicted GO
MF	GO:0022839	ion gated channel activity	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030247	polysaccharide binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0030594	neurotransmitter receptor activity	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
MF	GO:0038023	signaling receptor activity	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
MF	GO:0043565	sequence-specific DNA binding	IEP	Predicted GO
MF	GO:0060089	molecular transducer activity	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	386	458
IPR003613	Ubox_domain	2	61

External Links

No external refs found!

PSME_00054803-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation