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  5. PSME_00055002-RA

PSME_00055002-RA


Description : (at2g29670 : 310.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G07280.3); Has 535 Blast hits to 340 proteins in 62 species: Archae - 10; Bacteria - 119; Metazoa - 2; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). & (reliability: 620.0) & (original description: no original description)


Gene families : OG_42_0002299 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002299_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00055002-RA
Cluster HCCA clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
At2g29670 No alias At2g29670/T27A16.23 [Source:UniProtKB/TrEMBL;Acc:O82388] 0.03 Orthogroups_2024-Update
At3g47080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.04 Orthogroups_2024-Update
LOC_Os05g37520 No alias expressed protein 0.03 Orthogroups_2024-Update
Potri.001G250100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s45_106V6 No alias F10K1.1; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051321 meiotic cell cycle IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!