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- Sequence
- PSME_00055275-RA
PSME_00055275-RA
Description : (q41741|if4a_maize : 431.0) Eukaryotic initiation factor 4A (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A) (eIF-4A) - Zea mays (Maize) & (at1g72730 : 427.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A1 (TAIR:AT3G13920.1); Has 48726 Blast hits to 48144 proteins in 3104 species: Archae - 749; Bacteria - 26664; Metazoa - 6044; Fungi - 4769; Plants - 2616; Viruses - 17; Other Eukaryotes - 7867 (source: NCBI BLink). & (reliability: 854.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Pseudotsuga release: PSME_00055275-RA | |
| Cluster | HCCA clusters: Cluster_91 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| Pp1s519_18V6 | No alias | dead box atp-dependent rna | 0.02 | Orthogroups_2024-Update | |
| Sopen07g019510 | No alias | DEAD/DEAH box helicase | 0.02 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0000166 | nucleotide binding | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
| MF | GO:0005488 | binding | None | Extended |
| MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
| MF | GO:0008144 | drug binding | None | Extended |
| MF | GO:0017076 | purine nucleotide binding | None | Extended |
| MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
| MF | GO:0032553 | ribonucleotide binding | None | Extended |
| MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
| MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
| MF | GO:0036094 | small molecule binding | None | Extended |
| MF | GO:0043167 | ion binding | None | Extended |
| MF | GO:0043168 | anion binding | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
| MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0004180 | carboxypeptidase activity | IEP | Predicted GO |
| MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | Predicted GO |
| CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
| BP | GO:0006275 | regulation of DNA replication | IEP | Predicted GO |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
| BP | GO:0008156 | negative regulation of DNA replication | IEP | Predicted GO |
| MF | GO:0008238 | exopeptidase activity | IEP | Predicted GO |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Predicted GO |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Predicted GO |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Predicted GO |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Predicted GO |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
| BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
| CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
| CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
| BP | GO:0045005 | DNA-dependent DNA replication maintenance of fidelity | IEP | Predicted GO |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0048478 | replication fork protection | IEP | Predicted GO |
| BP | GO:0048519 | negative regulation of biological process | IEP | Predicted GO |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Predicted GO |
| BP | GO:0051052 | regulation of DNA metabolic process | IEP | Predicted GO |
| BP | GO:0051053 | negative regulation of DNA metabolic process | IEP | Predicted GO |
| BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | Predicted GO |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
| BP | GO:0090329 | regulation of DNA-dependent DNA replication | IEP | Predicted GO |
| BP | GO:2000104 | negative regulation of DNA-dependent DNA replication | IEP | Predicted GO |
| BP | GO:2000113 | negative regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR001650 | Helicase_C | 126 | 234 |
| IPR011545 | DEAD/DEAH_box_helicase_dom | 16 | 86 |
